Purification and characterization of the periplasmic nickel-binding protein NikA of Escherichia coli K12

Eur J Biochem. 1995 Feb 1;227(3):857-65. doi: 10.1111/j.1432-1033.1995.tb20211.x.

Abstract

The nik operon of Escherichia coli encodes a periplasmic binding-protein-dependent transport system specific for nickel. In this report, we describe the overproduction of the periplasmic nickel-binding protein NikA by cloning the nikA gene into an overexpression vector, pRE1. NikA was purified free of nickel to near homogeneity from the periplasm by hydrophobic and ion-exchange chromatography. N-terminal amino acid sequencing confirmed that the leader peptide of NikA had been removed. The nickel-binding properties of the protein has been studied by monitoring the quenching of intrinsic protein fluorescence. NikA binds one atom of nickel/molecule of protein with a dissociation constant (Kd) of less than 0.1 microM. Other metals (cobalt, copper, iron) are bound at least 10-fold less tightly. The high specificity for Ni2+ is also demonstrated by high-performance immobilized-metal-ion affinity chromatography. Biosynthesis of NikA occurred only under anaerobic conditions and was dependent on the general anaerobic regulator FNR. It was repressed by the presence of 250 microM Ni2+ in the growth medium and was not affected by either 30 mM formate or 100 mM nitrate. Anaerobically grown wild-type strain MC4100 contains about 23,000 molecules of NikA/cell. In addition to the effect on nickel transport, nikA mutation affects also the nickel sensing in Tar-dependent repellent chemotaxis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins*
  • Base Sequence
  • Biological Transport, Active
  • Chemotaxis
  • Cloning, Molecular
  • DNA Topoisomerases, Type I / genetics
  • DNA Topoisomerases, Type I / isolation & purification*
  • DNA Topoisomerases, Type I / metabolism
  • DNA, Bacterial / genetics
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Genes, Bacterial
  • Genetic Vectors
  • Metals / metabolism
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Mutation
  • Nickel / metabolism
  • Operon

Substances

  • Bacterial Proteins
  • DNA, Bacterial
  • Metals
  • nikA protein, Plasmid R64
  • Nickel
  • DNA Topoisomerases, Type I