A simple fragile X PCR assay with 7-deazaguanine-substituted DNA visualized by ethidium bromide

Mol Cell Probes. 1994 Apr;8(2):177-80. doi: 10.1006/mcpr.1994.1023.

Abstract

A deazaguanine-substituted DNA PCR product from FMR-1 (the fragile X mental retardation syndrome gene) can be efficiently visualized with ethidium bromide on standard agarose gels. Normal-sized alleles (less than 54 CGG repeats) generated strong, easily visible bands in the expected size range of 491-635 bp. Southern blot analysis and radioactive PCR on sequencing gels were used to verify that the 74 males (out of 245 total tested) whose DNA failed to generate a visible band contained premutations or full mutations. This technique can be used as an inexpensive screen for fragile X syndrome among developmentally delayed males.

MeSH terms

  • Alleles
  • Base Sequence
  • Blotting, Southern
  • DNA / analysis*
  • DNA / genetics*
  • Ethidium*
  • Fragile X Syndrome / diagnosis
  • Fragile X Syndrome / genetics*
  • Guanine / analogs & derivatives*
  • Guanine / analysis
  • Humans
  • Male
  • Molecular Sequence Data
  • Mutation
  • Polymerase Chain Reaction / methods*

Substances

  • Guanine
  • DNA
  • Ethidium
  • 7-deazaguanine