The reliability of the differential polymerase chain reaction compared to restriction fragment length polymorphism for the detection of gene loss in primary tumors

Cancer Lett. 1996 Feb 6;99(2):139-46. doi: 10.1016/0304-3835(95)04046-3.

Abstract

The loss of genetic information from a number of specific regions of the genome has been documented in human tumors in vivo. To estimate the frequency with which IFN beta 1 gene loss occurs in human gliomas, both restriction fragment length polymorphism (RFLP) analysis and polymerase chain reaction (PCR) amplification, using the IFN-gamma gene as a reference, were used and the results obtained with the two methods were compared. The relative intensity of PCR bands (IFN beta 1/IFN gamma) in the gliomas with loss of heterozygosity for the IFN beta 1 was significantly different (P < 0.05) with regard to the gliomas with the IFN beta 1 gene. Consequently, these findings indicate that differential PCR is a reliable and non-radioactive method of demonstrating gene loss in tumors.

Publication types

  • Comparative Study

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Alleles
  • Base Sequence
  • Child
  • Child, Preschool
  • Chromosome Deletion*
  • DNA Primers
  • DNA, Neoplasm / analysis
  • Female
  • Gene Deletion*
  • Glioma / genetics*
  • Glioma / pathology
  • Humans
  • Interferon-gamma / genetics*
  • Male
  • Middle Aged
  • Molecular Sequence Data
  • Polymerase Chain Reaction / methods*
  • Polymorphism, Restriction Fragment Length*
  • Reproducibility of Results

Substances

  • DNA Primers
  • DNA, Neoplasm
  • Interferon-gamma