Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA

Nat Struct Biol. 1998 Aug;5(8):701-6. doi: 10.1038/1400.

Abstract

The solution structure of the central domain of the human nucleotide excision repair protein XPA, which binds to damaged DNA and replication protein A (RPA), was determined by nuclear magnetic resonance (NMR) spectroscopy. The central domain consists of a zinc-containing subdomain and a C-terminal subdomain. The zinc-containing subdomain has a compact globular structure and is distinct from the zinc-fingers found in transcription factors. The C-terminal subdomain folds into a novel alpha/beta structure with a positively charged superficial cleft. From the NMR spectra of the complexes, DNA and RPA binding surfaces are suggested.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • DNA Repair*
  • DNA-Binding Proteins* / chemistry*
  • Humans
  • Metalloproteins / chemistry
  • Models, Molecular
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Conformation
  • RNA-Binding Proteins / chemistry*
  • Replication Protein A
  • Sequence Homology, Amino Acid
  • Xeroderma Pigmentosum
  • Xeroderma Pigmentosum Group A Protein
  • Zinc

Substances

  • DNA-Binding Proteins
  • Metalloproteins
  • RNA-Binding Proteins
  • RPA1 protein, human
  • Replication Protein A
  • XPA protein, human
  • Xeroderma Pigmentosum Group A Protein
  • Zinc

Associated data

  • PDB/1XPA