Multiplex SSCP and heteroduplex analysis with Southern hybridization for large-scale mutation detection

Genomics. 1998 Nov 15;54(1):1-4. doi: 10.1006/geno.1998.5525.

Abstract

We have developed a modification of the single-strand conformational analysis and heteroduplex analysis methods of mutation detection, with the intention of applying them to genetic diseases involving large genes or multiple genes producing a similar phenotype. The technique involves electrophoresing up to 10 or more DNA fragments on a polyacrylamide gel, followed by bidirectional Southern blotting and individual examination by hybridization. This can reduce the time involved in mutation detection by more than 50%. We confirmed the validity of our approach by detecting 90% of mutations in a blind study of previously characterized mutations in the adenomatous polyposis coli (APC) gene that underlies familial adenomatous polyposis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenomatous Polyposis Coli / genetics*
  • Blotting, Southern
  • DNA Mutational Analysis / methods*
  • Genes, APC / genetics*
  • Heteroduplex Analysis*
  • Humans
  • Polymorphism, Single-Stranded Conformational*