Analysis of a human cDNA containing a tissue-specific alternatively spliced LIM domain

Biochem Biophys Res Commun. 1998 Nov 18;252(2):433-9. doi: 10.1006/bbrc.1998.9656.

Abstract

A unique clone, isolated from a human pancreatic cDNA library, was sequenced and characterized. Northern blot analysis showed that the gene is active in a number of fetal and adult tissues, and immunoblots showed expression in nuclear and cytosolic cell fractions. The gene corresponding to the clone was localized to chromosome 13 by human/rodent somatic cell hybrid panels. The largest open reading frame contains a LIM domain, and the deduced peptide from the open reading frame appears to have the characteristics of a LIM-only protein, designated LMO7. RT-PCR and genomic sequence analyses indicate that expression of this gene product is subject to tissue-specific modulation by elimination of the LIM domain by alternative splicing in neural tissues.

Publication types

  • Comparative Study

MeSH terms

  • Adult
  • Alternative Splicing*
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Cloning, Molecular
  • Consensus Sequence
  • DNA, Complementary / genetics*
  • Fetus / metabolism
  • Genetic Variation
  • Homeodomain Proteins / genetics*
  • Humans
  • LIM Domain Proteins
  • Molecular Sequence Data
  • Nerve Tissue / metabolism
  • Pancreas / metabolism
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Homology, Amino Acid
  • Tissue Distribution
  • Transcription Factors / genetics*

Substances

  • DNA, Complementary
  • Homeodomain Proteins
  • LIM Domain Proteins
  • LMO7 protein, human
  • Transcription Factors

Associated data

  • GENBANK/AF092554
  • GENBANK/AF092555
  • GENBANK/AF092556
  • GENBANK/AF092557