SCOP: a Structural Classification of Proteins database

Nucleic Acids Res. 1999 Jan 1;27(1):254-6. doi: 10.1093/nar/27.1.254.

Abstract

The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known proteins structures. The classification is on hierarchical levels: the first two levels, family and superfamily, describe near and far evolutionary relationships; the third, fold, describes geometrical relationships. The distinction between evolutionary relationships and those that arise from the physics and chemistry of proteins is a feature that is unique to this database, so far. The database can be used as a source of data to calibrate sequence search algorithms and for the generation of population statistics on protein structures. The database and its associated files are freely accessible from a number of WWW sites mirrored from URL http://scop. mrc-lmb.cam.ac.uk/scop/

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Databases, Factual*
  • Evolution, Molecular
  • Information Storage and Retrieval
  • Internet
  • Protein Conformation*
  • Protein Folding
  • Proteins / chemistry*
  • Proteins / classification*
  • Proteins / genetics
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Statistics as Topic

Substances

  • Proteins