In vitro analysis of the zinc-finger motif in human replication protein A

Biochem J. 1999 Jan 15;337 ( Pt 2)(Pt 2):311-7.

Abstract

Human replication protein A (RPA) is composed of 70, 34 and 11 kDa subunits (p70, p34 and p11 respectively) and functions in all three major DNA metabolic processes: replication, repair and recombination. Recent deletion analysis demonstrated that the large subunit of RPA, p70, has multiple functional domains, including a DNA polymerase alpha-stimulation domain and a single-stranded DNA-binding domain. It also contains a putative metal-binding domain of the 4-cysteine type (Cys-Xaa4-Cys-Xaa13-Cys-Xaa2-Cys) that is highly conserved among eukaryotes. To study the role of this domain in DNA metabolism, we created various p70 mutants that lack the zinc-finger motif (by Cys-->Ala substitutions). Mutation at the zinc-finger domain (ZFM) abolished RPA's function in nucleotide excision repair (NER), but had very little impact on DNA replication. The failure of zinc-finger mutant RPA in NER may be explained by the observation that wild-type RPA significantly stimulated DNA polymerase delta activity, whereas only marginal stimulation was observed with zinc-finger mutant RPA. We also observed that ZFM reduced RPA's single-stranded DNA-binding activity by 2-3-fold in the presence of low amounts of RPA. Interestingly, the ZFM abolished phosphorylation of the p34 subunit by DNA-dependent protein kinase, but not that by cyclin-dependent kinase. Taker together, our results strongly suggest a positive role for RPA's zinc finger domain in its function.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • DNA Polymerase III / metabolism
  • DNA Repair
  • DNA Replication
  • DNA, Single-Stranded / metabolism
  • DNA-Activated Protein Kinase
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • Humans
  • Mutation
  • Nuclear Proteins
  • Phosphorylation
  • Protein Binding
  • Protein Conformation
  • Protein Serine-Threonine Kinases
  • Replication Protein A
  • Xeroderma Pigmentosum Group A Protein
  • Zinc Fingers* / genetics

Substances

  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Nuclear Proteins
  • RPA1 protein, human
  • Replication Protein A
  • XPA protein, human
  • Xeroderma Pigmentosum Group A Protein
  • DNA-Activated Protein Kinase
  • PRKDC protein, human
  • Protein Serine-Threonine Kinases
  • DNA Polymerase III