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PXD014520

PXD014520 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleReanalysis of Cross-Linking Mass Spectrometry data from a ribisomal cellular fraction for benchmarking purposes
DescriptionReanalysis of a cross-linked ribosomal cellular fraction dataset, that is a subset of a fragmentation parameters optimization dataset (PRIDE project PXD006131). The HCD fragmented part of the dataset was searched with the Cross-Linking MS identification tools OpenPepXL, pLink2, Kojak and XiSearch.
HostingRepositoryPRIDE
AnnounceDate2020-10-20
AnnouncementXMLSubmission_2020-10-19_22:34:39.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterEugen Netz
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-07-08 07:12:57ID requested
12020-10-19 22:34:40announced
Publication List
Netz E, Dijkstra TMH, Sachsenberg T, Zimmermann L, Walzer M, Monecke T, Ficner R, Dybkov O, Urlaub H, Kohlbacher O, OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS. Mol Cell Proteomics, 19(12):2157-2168(2020) [pubmed]
Keyword List
submitter keyword: Technical dataset, cross-linking, BS3
Contact List
Oliver Kohlbacher
contact affiliation1. Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; 2. Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; 3. Quantitative Biology Center (QBiC), University of Tübingen, Germany; 4. Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; 5. Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany
contact emailoliver.kohlbacher@uni-tuebingen.de
lab head
Eugen Netz
contact affiliationBiomolecular Interactions, Max Planck Institute for Developmental Biology
contact emaileugen.netz@gmail.com
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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