PXD014520 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Reanalysis of Cross-Linking Mass Spectrometry data from a ribisomal cellular fraction for benchmarking purposes |
Description | Reanalysis of a cross-linked ribosomal cellular fraction dataset, that is a subset of a fragmentation parameters optimization dataset (PRIDE project PXD006131). The HCD fragmented part of the dataset was searched with the Cross-Linking MS identification tools OpenPepXL, pLink2, Kojak and XiSearch. |
HostingRepository | PRIDE |
AnnounceDate | 2020-10-20 |
AnnouncementXML | Submission_2020-10-19_22:34:39.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Eugen Netz |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2019-07-08 07:12:57 | ID requested | |
⏵ 1 | 2020-10-19 22:34:40 | announced | |
Publication List
Netz E, Dijkstra TMH, Sachsenberg T, Zimmermann L, Walzer M, Monecke T, Ficner R, Dybkov O, Urlaub H, Kohlbacher O, OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS. Mol Cell Proteomics, 19(12):2157-2168(2020) [pubmed] |
Keyword List
submitter keyword: Technical dataset, cross-linking, BS3 |
Contact List
Oliver Kohlbacher |
contact affiliation | 1. Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; 2. Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; 3. Quantitative Biology Center (QBiC), University of Tübingen, Germany; 4. Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; 5. Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany |
contact email | oliver.kohlbacher@uni-tuebingen.de |
lab head | |
Eugen Netz |
contact affiliation | Biomolecular Interactions, Max Planck Institute for Developmental Biology |
contact email | eugen.netz@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/10/PXD014520 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD014520
- Label: PRIDE project
- Name: Reanalysis of Cross-Linking Mass Spectrometry data from a ribisomal cellular fraction for benchmarking purposes