PXD021417

PXD021417 is an original dataset announced via ProteomeXchange.

Title	Reanalysis of a synthetic cross-linked peptide library with OpenPepXL for benchmarking purposes
Description	Reanalysis of a synthetic crosslinked peptide library dataset. The three replicates of the XL-MS experiment with the non-cleavable cross-linker DSS from the dataset published in Beveridge et al., Nature Commun., 2020 (PRIDE project PXD014337) were searched with the XL-MS identification tool OpenPepXL for benchmarking purposes.
HostingRepository	PRIDE
AnnounceDate	2020-10-20
AnnouncementXML	Submission_2020-10-19_22:31:36.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Eugen Netz
SpeciesList	scientific name: Streptococcus pyogenes ABC020006030; NCBI TaxID: 1438992;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2020-09-10 23:22:40	ID requested
⏵ 1	2020-10-19 22:31:37	announced

Netz E, Dijkstra TMH, Sachsenberg T, Zimmermann L, Walzer M, Monecke T, Ficner R, Dybkov O, Urlaub H, Kohlbacher O, OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS. Mol Cell Proteomics, 19(12):2157-2168(2020) [pubmed]

submitter keyword: Technical dataset

Oliver Kohlbacher
contact affiliation	1. Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; 2. Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; 3. Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; 4. Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany;
contact email	oliver.kohlbacher@uni-tuebingen.de
lab head
Eugen Netz
contact affiliation	Biomolecular Interactions, Max Planck Institute for Developmental Biology
contact email	eugen.netz@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/10/PXD021417

PRIDE project URI

• PRIDE
  1. PXD021417
     1. Label: PRIDE project
     2. Name: Reanalysis of a synthetic cross-linked peptide library with OpenPepXL for benchmarking purposes