Registry

1343 results found.

   DrugBank Target information version 3  
The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical...
The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 3 of the database.

Home: http://v3.drugbank.ca/
Institution: Departments of Computing Science, Biological Sciences, University of Alberta
Location: Canada
Example: http://identifiers.org/drugbank.target:54
Uptime: 75%
   EBI Metagenomics Project   [Namespace: ebimetagenomics.proj]  
The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylog...
The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references projects.

URI: http://identifiers.org/ebimetagenomics.proj
Identifier pattern: ^[A-Z]+[0-9]+$
Example: http://identifiers.org/ebimetagenomics.proj:ERP004492
   EBI metagenomics projects at EBI   [Provider code: ebi]   
The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylog...
The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references projects.

Home: https://www.ebi.ac.uk/metagenomics
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/ebimetagenomics.proj:ERP004492
Uptime: 100%
   EPD   [Namespace: epd]  
The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site...
The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.

Synonyms: Eukaryotic Promoter Database
URI: http://identifiers.org/epd
Identifier pattern: ^[A-Z-_0-9]+$
Example: http://identifiers.org/epd:TA_H3
   EPD at Swiss Institute of Bioinformatics  
The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site...
The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to other databases, and bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.

Home: http://epd.vital-it.ch/
Institution: Swiss Institute of Bioinformatics (SIB), Geneva
Location: Switzerland
Example: http://identifiers.org/epd:TA_H3
Uptime: 98%
   ZINC   [Namespace: zinc]  
ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically releva...
ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.

URI: http://identifiers.org/zinc
Identifier pattern: ^(ZINC)?\d+$
Example: http://identifiers.org/zinc:ZINC1084
   ZINC at University of California (San Francisco)  
ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically releva...
ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.

Primary: true
Home: http://zinc15.docking.org/
Institution: Shoichet Laboratory, Department of Pharmaceutical Chemistry, University of California, San Francisco
Location: USA
Example: http://identifiers.org/zinc:ZINC1084
Uptime: 99%
   RFAM   [Namespace: rfam]  
The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance mod...
The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.

Synonyms: RNA Family Database
URI: http://identifiers.org/rfam
Identifier pattern: ^RF\d{5}$
Example: http://identifiers.org/rfam:RF00230
   Rfam at EMBL-EBI   [Provider code: ebi]   
The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance mod...
The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.

Primary: true
Home: http://rfam.xfam.org/
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/rfam:RF00230
Uptime: 80%
   HGNC Family   [Namespace: hgnc.family]  
The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approve...
The HGNC (HUGO Gene Nomenclature Committee) provides an approved gene name and symbol (short-form abbreviation) for each known human gene. All approved symbols are stored in the HGNC database, and each symbol is unique. In addition, HGNC also provides symbols for both structural and functional gene families. This collection refers to records using the HGNC family symbol.

URI: http://identifiers.org/hgnc.family
Identifier pattern: ^[A-Z0-9-]+(#[A-Z0-9-]+)?$
Example: http://identifiers.org/hgnc.family:PADI
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