Registry

17 results found.

   DEPOD at EMBL  
The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and non...
The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.

Home: http://www.koehnlab.de/depod/
Institution: European Molecular Biology Laboratory EMBL, Heidelberg
Location: Germany
Example: http://identifiers.org/depod/PTPN1
Uptime: 55%
   SMART (Simple Modular Architecture Research Tool)  
The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of ...
The Simple Modular Architecture Research Tool (SMART) is an online tool for the identification and annotation of protein domains, and the analysis of domain architectures.

Home: http://smart.embl-heidelberg.de/
Institution: EMBL, Heidelberg
Location: Germany
Example: http://identifiers.org/smart/SM00015
Uptime: 100%
   Ensembl at Sanger/EMBL-EBI   [Provider code: ebi]   
Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation...
Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.

Primary: true
Home: http://www.ensembl.org/
Institution: Sanger Institute and European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/ensembl/ENSG00000139618
Uptime: 99%
   BioCatalogue at EMBL-EBI   [Provider code: ebi]   
The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services ...
The BioCatalogue provides a common interface for registering, browsing and annotating Web Services to the Life Science community. Registered services are monitored, allowing the identification of service problems and changes and the filtering-out of unavailable or unreliable resources. BioCatalogue is free to use, for all.

Home: http://www.biocatalogue.org/
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/biocatalogue.service/614
Uptime: 93%
   Pfam at EMBL-EBI   [Provider code: ebi]   
The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is st...
The Pfam database contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored.

Primary: true
Home: http://pfam.xfam.org/
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/pfam/PF01234
Uptime: 100%
   ELM at EMBL (Germany)  
Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Mo...
Linear motifs are short, evolutionarily plastic components of regulatory proteins. Mainly focused on the eukaryotic sequences,the Eukaryotic Linear Motif resource (ELM) is a database of curated motif classes and instances.

Home: http://elm.eu.org/
Institution: Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg
Location: Germany
Example: http://identifiers.org/elm/CLV_MEL_PAP_1
Uptime: 99%
   Vectorbase at EMBL-EBI   [Provider code: ebi]   
VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vecto...
VectorBase is an NIAID-funded Bioinformatic Resource Center focused on invertebrate vectors of human pathogens. VectorBase annotates and curates vector genomes providing a web accessible integrated resource for the research community. Currently, VectorBase contains genome information for three mosquito species: Aedes aegypti, Anopheles gambiae and Culex quinquefasciatus, a body louse Pediculus humanus and a tick species Ixodes scapularis.

Primary: true
Home: http://www.vectorbase.org/
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/vectorbase/ISCW007415
Uptime: 52%
   HSSP at EMBL  
HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein...
HSSP (homology-derived structures of proteins) is a derived database merging structural (2-D and 3-D) and sequence information (1-D). For each protein of known 3D structure from the Protein Data Bank, the database has a file with all sequence homologues, properly aligned to the PDB protein.

Home: http://swift.cmbi.kun.nl/swift/hssp/
Institution: Protein Design Group, European Molecular Biology Laboratory, Heidelberg
Location: Germany
Example: http://identifiers.org/hssp/102l
Uptime: 97%
   Rfam at EMBL-EBI   [Provider code: ebi]   
The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance mod...
The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.

Primary: true
Home: http://rfam.xfam.org/
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/rfam/RF00230
Uptime: 77%
   SIDER Side Effect v2 at EMBL (Heidelberg)  
SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed pub...
SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.

Home: http://sideeffects.embl.de/
Institution: Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg
Location: Germany
Example: http://identifiers.org/sider.effect/C0017565
Uptime: 100%
   SIDER Drug v2 at EMBL (Heidelberg)  
SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed pub...
SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.

Home: http://sideeffects.embl.de/
Institution: Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg
Location: Germany
Example: http://identifiers.org/sider.drug/2244
Uptime: 100%
   ENA   [Namespace: ena.embl]  
The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing...
The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers.

Synonyms: European Nucleotide Archive
URI: http://identifiers.org/ena.embl
Identifier pattern: ^[A-Z]+[0-9]+(\.\d+)?$
Example: http://identifiers.org/ena.embl/BN000065
   ENA at European Bioinformatics Institute   [Provider code: ebi]   
The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing...
The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. ENA is made up of a number of distinct databases that includes EMBL-Bank, the Sequence Read Archive (SRA) and the Trace Archive each with their own data formats and standards. This collection references Embl-Bank identifiers.

Home: http://www.ebi.ac.uk/ena/
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/ena.embl/BN000065
Uptime: 100%
   Ensembl   [Namespace: ensembl]  
Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation...
Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.

URI: http://identifiers.org/ensembl
Identifier pattern: ^((ENS[A-Z]*[FPTG]\d{11}(\.\d+)?)|(FB\w{2}\d{7})|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?)|([A-Z_a-z0-9]+(\.)?(t)?(\d+)?([a-z])?))$
Example: http://identifiers.org/ensembl/ENSG00000139618
   Ensembl US West mirror  
Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation...
Ensembl is a joint project between EMBL - EBI and the Sanger Institute to develop a software system which produces and maintains automatic annotation on selected eukaryotic genomes. This collections also references outgroup organisms.

Home: http://uswest.ensembl.org/
Institution:
Location: USA
Example: http://identifiers.org/ensembl/ENSG00000139618
Uptime: 99%
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