Registry

51 results found.

   LigandBox at  
LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approv...
LigandBox is a database of 3D compound structures. Compound information is collected from the catalogues of various commercial suppliers, with approved drugs and biochemical compounds taken from KEGG and PDB databases. Each chemical compound in the database has several 3D conformers with hydrogen atoms and atomic charges, which are ready to be docked into receptors using docking programs. Various physical properties, such as aqueous solubility (LogS) and carcinogenicity have also been calculated to characterize the ADME-Tox properties of the compounds.

Home: http://ligandbox.protein.osaka-u.ac.jp/ligandbox//cgi-bin/index.cgi?LANG=en
Institution: nstitute for Protein Research, Osaka University and Fujitsu Kyushu R&D Center, Life Science Systems Dept., Fujitsu
Location: Japan
Example: http://identifiers.org/ligandbox/D00001
Uptime: 98%
   GlycoEpitope at Ritsumeikan University  
GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) th...
GlycoEpitope is a database containing useful information about carbohydrate antigens (glyco-epitopes) and the antibodies (polyclonal or monoclonal) that can be used to analyze their expression. This collection references Glycoepitopes.

Home: http://www.glycoepitope.jp/epitopes/
Institution: Kawasaki laboratory, Research Center for Glycobiotechnology, Ritsumeikan University
Location: Japan
Example: http://identifiers.org/glycoepitope/EP0311
Uptime: 96%
   KEGG Disease at Kyoto University Bioinformatics Center  
The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contai...
The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.

Primary: true
Home: http://www.genome.jp/kegg/disease/
Institution: Kyoto University Bioinformatics Center, Kyoto
Location: Japan
Example: http://identifiers.org/kegg.disease/H00076
Uptime: 100%
   KEGG Module at Kyoto University Bioinformatics Center  
KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds ...
KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.

Primary: true
Home: http://www.kegg.jp/kegg/module.html
Institution: Department of Computational Biology, University of Tokyo, Tokyo
Location: Japan
Example: http://identifiers.org/kegg.module/M00002
Uptime: 100%
   GLIDA GPCR at Kyoto University  
The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs...
The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references G-protein coupled receptors.

Home: http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/
Institution: Department of Genomic Drug Discovery Science, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto
Location: Japan
Example: http://identifiers.org/glida.gpcr/ACM1_HUMAN
Uptime: 98%
   GLIDA Ligand at Kyoto University  
The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs...
The GPCR-LIgand DAtabase (GLIDA) is a GPCR-related chemical genomic database that is primarily focused on the correlation of information between GPCRs and their ligands. It provides correlation data between GPCRs and their ligands, along with chemical information on the ligands. This collection references ligands.

Home: http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/
Institution: Department of Genomic Drug Discovery Science, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto
Location: Japan
Example: http://identifiers.org/glida.ligand/L000001
Uptime: 98%
   KEGG at Kyoto University Bioinformatics Center  
Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, s...
Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.

Home: http://www.kegg.jp/
Institution: Kyoto University Bioinformatics Center
Location: Japan
Example: http://identifiers.org/kegg/hsa00190
Uptime: 100%
   JCGGDB   [Namespace: jcggdb]  
JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various r...
JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. This includes databases for large-quantity synthesis of glycogenes and glycans, analysis and detection of glycan structure and glycoprotein, glycan-related differentiation markers, glycan functions, glycan-related diseases and transgenic and knockout animals, etc.

Synonyms: Japan Consortium for Glycobiology and Glycotechnology DataBase
URI: http://identifiers.org/jcggdb
Identifier pattern: ^JCGG-STR\d{6}$
Example: http://identifiers.org/jcggdb/JCGG-STR008690
   BioSample   [Namespace: biosample]  
The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. I...
The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.

Synonyms: BioSDe
URI: http://identifiers.org/biosample
Identifier pattern: ^SAM[NED](\w)?\d+$
Example: http://identifiers.org/biosample/SAMEA2397676
   BioSample Database at EBI   [Provider code: ebi]   
The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. I...
The BioSample Database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.

Primary: true
Home: http://www.ebi.ac.uk/biosamples/
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/biosample/SAMEA2397676
Uptime: 99%
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