177 results found.

   AmiGO 2   [Provider code: amigo]   
The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.
The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism.

Primary: true
Home: http://amigo.geneontology.org/
Institution: The Gene Ontology Consortium
Location: USA
Example: http://identifiers.org/GO:0006915
Uptime: 99%
   Brenda Tissue Ontology   [Namespace: bto]  
The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database....
The Brenda tissue ontology is a structured controlled vocabulary eastablished to identify the source of an enzyme cited in the Brenda enzyme database. It comprises terms of tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.

Synonyms: BTO
URI: http://identifiers.org/bto
Identifier pattern: ^BTO:\d{7}$
Example: http://identifiers.org/BTO:0000146
   Systems Biology Ontology   [Namespace: sbo]  
The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being fa...
The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.

Synonyms: SBO
URI: http://identifiers.org/sbo
Identifier pattern: ^SBO:\d{7}$
Example: http://identifiers.org/SBO:0000262
   EDAM Ontology   [Namespace: edam]  
EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled ...
EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).

Synonyms: EMBRACE Data and Methods Ontology
URI: http://identifiers.org/edam
Identifier pattern: ^(data|topic|operation|format)\_\d{4}$
Example: http://identifiers.org/edam:1664
   UBERON through bioPortal   [Provider code: bptl]   
Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such...
Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.

Home: http://bioportal.bioontology.org/ontologies/UBERON
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/UBERON:0008203
Uptime: 89%
   Mammalian Phenotype Ontology   [Namespace: mp]  
The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology ...
The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.

URI: http://identifiers.org/mp
Identifier pattern: ^MP:\d{7}$
Example: http://identifiers.org/MP:0005452
   Experimental Factor Ontology   [Namespace: efo]  
The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts ...
The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team.

Synonyms: EFO
URI: http://identifiers.org/efo
Identifier pattern: ^\d{7}$
Example: http://identifiers.org/efo:0004859
   Sequence Ontology through Ontology Lookup Service (OLS)   [Provider code: ols]   
The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definiti...
The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.

Home: https://www.ebi.ac.uk/ols/ontologies/so
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/SO:0000704
Uptime: 100%
   Plant Ontology through Amigo   [Provider code: amigo]   
The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics ...
The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.

Home: http://www.plantontology.org/
Institution: Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
Location: USA
Example: http://identifiers.org/PO:0009089
Uptime: 100%
   Plant Ontology through OLS   [Provider code: ols]   
The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics ...
The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.

Home: https://www.ebi.ac.uk/ols/ontologies/po
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/PO:0009089
Uptime: 100%
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