Registry

173 results found.

   EFO through BioPortal   [Provider code: bptl]   
The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts ...
The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team.

Home: http://bioportal.bioontology.org/ontologies/EFO
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/efo:0004859
Uptime: 96%
   SBO through BioPortal   [Provider code: bptl]   
The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being fa...
The goal of the Systems Biology Ontology is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling. SBO is a project of the BioModels.net effort.

Home: http://bioportal.bioontology.org/ontologies/SBO
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/SBO:0000262
Uptime: 88%
   EDAM through BioPortal   [Provider code: bptl]   
EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled ...
EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).

Home: http://bioportal.bioontology.org/ontologies/EDAM
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/edam:data_1664
Uptime: 97%
   BioAssay Ontology through BioPortal   [Provider code: bptl]   
The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpo...
The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis.

Home: http://bioportal.bioontology.org/ontologies/BAO/
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/bao:0002989
Uptime: 98%
   Sequence Ontology through Ontology Lookup Service (OLS)   [Provider code: ols]   
The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definiti...
The Sequence Ontology (SO) is a structured controlled vocabulary for the parts of a genomic annotation. It provides a common set of terms and definitions to facilitate the exchange, analysis and management of genomic data.

Home: http://www.ebi.ac.uk/ols/ontologies/so
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/SO:0000704
Uptime: 100%
   Plant Ontology through Amigo   [Provider code: amigo]   
The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics ...
The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.

Home: http://www.plantontology.org/
Institution: Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
Location: USA
Example: http://identifiers.org/PO:0009089
Uptime: 100%
   Plant Ontology through OLS   [Provider code: ols]   
The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics ...
The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data.

Home: http://www.ebi.ac.uk/ols/ontologies/po
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/PO:0009089
Uptime: 99%
   Protein modifications ontology via the Ontology Lookup Service (OLS)   [Provider code: ols]   
The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchic...
The Proteomics Standards Initiative modification ontology (PSI-MOD) aims to define a concensus nomenclature and ontology reconciling, in a hierarchical representation, the complementary descriptions of residue modifications.

Home: http://www.ebi.ac.uk/ols/ontologies/mod
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/MOD:00001
Uptime: 99%
   Gramene Growth Stage Ontology at Cold Spring Harbor  
Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic an...
Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.

Home: http://www.gramene.org/
Institution: Cold Spring Harbor Laboratory, New York
Location: USA
Example: http://identifiers.org/GRO:0007133
Uptime: 99%
   Human Disease Ontology   [Namespace: doid]  
The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consi...
The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts.

Synonyms: DO
URI: http://identifiers.org/doid
Identifier pattern: ^DOID\:\d+$
Example: http://identifiers.org/DOID:11337
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