Registry

169 results found.

   Orphanet Rare Disease Ontology   [Namespace: orphanet.ordo]  
The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other rele...
The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).

Synonyms: ORDO
URI: http://identifiers.org/orphanet.ordo
Identifier pattern: ^Orphanet(_|:)C?\d+$
Example: http://identifiers.org/orphanet.ordo/Orphanet_C023
   Gene Ontology Reference at The Gene Ontology Consortium  
The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (...
The GO reference collection is a set of abstracts that can be cited in the GO ontologies (e.g. as dbxrefs for term definitions) and annotation files (in the Reference column). It provides two types of reference; It can be used to provide details of why specific Evidence codes (see http://identifiers.org/eco/) are assigned, or to present abstract-style descriptions of "GO content" meetings at which substantial changes in the ontologies are discussed and made.

Home: http://www.geneontology.org/cgi-bin/references.cgi
Institution: The Gene Ontology Consortium
Location: USA
Example: http://identifiers.org/go.ref/GO_REF:0000041
Uptime: 100%
   Ontology for Biomedical Investigations through Bioportal   [Provider code: bptl]   
The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investiga...
The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of biological and clinical investigations. The ontology will represent the design of an investigation, the protocols and instrumentation used, the material used, the data generated and the type analysis performed on it. Currently OBI is being built under the Basic Formal Ontology (BFO).

Home: http://bioportal.bioontology.org/ontologies/OBI
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/obi/OBI:0000070
Uptime: 65%
   Mouse Adult Gross Anatomy through BioPortal   [Provider code: bptl]   
A structured controlled vocabulary of the adult anatomy of the mouse (Mus)
A structured controlled vocabulary of the adult anatomy of the mouse (Mus)

Home: http://bioportal.bioontology.org/ontologies/MA
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/ma/MA:0002502
Uptime: 89%
   Pathway Ontology through OLS   [Provider code: ols]   
The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such ne...
The Pathway Ontology captures information on biological networks, the relationships between netweorks and the alterations or malfunctioning of such networks within a hierarchical structure. The five main branches of the ontology are: classic metabolic pathways, regulatory, signaling, drug, and disease pathwaysfor complex human conditions.

Home: http://www.ebi.ac.uk/ols/ontologies/pw
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/pw/PW:0000208
Uptime: 99%
   Mammalian Phenotype Ontology   [Namespace: mp]  
The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology ...
The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.

URI: http://identifiers.org/mp
Identifier pattern: ^MP:\d{7}$
Example: http://identifiers.org/mp/MP:0005452
   Molecular Interactions Ontology   [Namespace: psimi]  
The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein int...
The Molecular Interactions (MI) ontology forms a structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. MI is developed by the HUPO Proteomics Standards Initiative.

Synonyms: MI
URI: http://identifiers.org/psimi
Identifier pattern: ^MI:\d{4}$
Example: http://identifiers.org/psimi/MI:0308
   Human Disease Ontology through OLS   [Provider code: ols]   
The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consi...
The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing the biomedical community with consistent, reusable and sustainable descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts.

Home: http://www.ebi.ac.uk/ols/ontologies/doid
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/doid/DOID:11337
Uptime: 99%
   Human Phenotype Ontology   [Namespace: hp]  
The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in th...
The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.

Synonyms: HPO
URI: http://identifiers.org/hp
Identifier pattern: ^HP:\d{7}$
Example: http://identifiers.org/hp/HP:0000118
   Plant Environment Ontology through BioPortal   [Provider code: bptl]   
The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant /...
The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.

Home: http://bioportal.bioontology.org/ontologies/PECO
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/eo/EO:0007404
Uptime: 97%
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