177 results found.

   EFO through BioPortal   [Provider code: bptl]   
The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts ...
The Experimental Factor Ontology (EFO) provides a systematic description of many experimental variables available in EBI databases. It combines parts of several biological ontologies, such as anatomy, disease and chemical compounds. The scope of EFO is to support the annotation, analysis and visualization of data handled by the EBI Functional Genomics Team.

Home: http://bioportal.bioontology.org/ontologies/EFO
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/efo:0004859
Uptime: 96%
   Mammalian Phenotype Ontology at The Jackson Lab  
The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology ...
The Mammalian Phenotype Ontology (MP) classifies and organises phenotypic information related to the mouse and other mammalian species. This ontology has been applied to mouse phenotype descriptions in various databases allowing comparisons of data from diverse mammalian sources. It can facilitate in the identification of appropriate experimental disease models, and aid in the discovery of candidate disease genes and molecular signaling pathways.

Home: http://www.informatics.jax.org/
Institution: The Jackson Laboratory, Bar Harbor, Maine
Location: USA
Example: http://identifiers.org/MP:0005452
Uptime: 33%
   Orphanet Rare Disease Ontology   [Namespace: orphanet.ordo]  
The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other rele...
The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases. It integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).

Synonyms: ORDO
URI: http://identifiers.org/orphanet.ordo
Identifier pattern: ^Orphanet(_|:)C?\d+$
Example: http://identifiers.org/orphanet.ordo:Orphanet_C023
   BioAssay Ontology   [Namespace: bao]  
The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpo...
The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis.

URI: http://identifiers.org/bao
Identifier pattern: ^\d{7}$
Example: http://identifiers.org/bao:0002989
   Plant Environment Ontology through BioPortal   [Provider code: bptl]   
The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant /...
The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.

Home: http://bioportal.bioontology.org/ontologies/PECO
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/EO:0007404
Uptime: 84%
   FoodOn Food Ontology   [Namespace: foodon]  
FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly know...
FoodOn is a comprehensive and easily accessible global farm-to-fork ontology about food that accurately and consistently describes foods commonly known in cultures from around the world. It is a consortium-driven project built to interoperate with the The Open Biological and Biomedical Ontology Foundry library of ontologies.

URI: http://identifiers.org/foodon
Identifier pattern: ^FOODON:[0-9]{8}$
Example: http://identifiers.org/FOODON:03307879
   Human Phenotype Ontology through OLS   [Provider code: ols]   
The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in th...
The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.

Home: https://www.ebi.ac.uk/ols/ontologies/hp
Institution: European Bioinformatics Institute, Hinxton, Cambridge
Location: UK
Example: http://identifiers.org/HP:0000118
Uptime: 99%
   EDAM through BioPortal   [Provider code: bptl]   
EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled ...
EDAM is an ontology of general bioinformatics concepts, including topics, data types, formats, identifiers and operations. EDAM provides a controlled vocabulary for the description, in semantic terms, of things such as: web services (e.g. WSDL files), applications, tool collections and packages, work-benches and workflow software, databases and ontologies, XSD data schema and data objects, data syntax and file formats, web portals and pages, resource catalogues and documents (such as scientific publications).

Home: http://bioportal.bioontology.org/ontologies/EDAM
Institution: National Center for Biomedical Ontology, Stanford
Location: USA
Example: http://identifiers.org/edam:data_1664
Uptime: 97%
   Gramene Growth Stage Ontology at Cold Spring Harbor  
Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic an...
Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.

Home: http://www.gramene.org/
Institution: Cold Spring Harbor Laboratory, New York
Location: USA
Example: http://identifiers.org/GRO:0007133
Uptime: 99%
   Mathematical Modelling Ontology   [Namespace: mamo]  
The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, ...
The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.

Synonyms: MAMO
URI: http://identifiers.org/mamo
Identifier pattern: ^MAMO_\d{7}$
Example: http://identifiers.org/mamo:MAMO_0000026
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