X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

Resource Name
RRID:SCR_014402 RRID Copied      
PDF Report How to cite
SortMeRNA (RRID:SCR_014402)
Copy Citation Copied
Resource Information

URL: http://bioinfo.lifl.fr/RNA/sortmerna/

Proper Citation: SortMeRNA (RRID:SCR_014402)

Description: Sequence analysis software for filtering, mapping and OTU-picking NGS reads. SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user.

Resource Type: data analysis software, software application, sequence analysis software, data processing software, software resource

Defining Citation: PMID:23071270, DOI:10.1093/bioinformatics/bts611

Keywords: sequence analysis software, filter, map, otu picking, ngs, sort, rna, rrna, bio.tools

Expand All
This resource

uses

QIIME

is listed by

Debian

is listed by

bio.tools

Usage and Citation Metrics
We apologize, the data for 2022 is currently unavailable for most resources. We are aware of the issue and are working to resolve it.

We found {{ ctrl2.mentions.total_count }} mentions in open access literature.

We have not found any literature mentions for this resource.

We are searching literature mentions for this resource.

View full usage report

Most recent articles:

{{ mention._source.dc.creators[0].familyName }} {{ mention._source.dc.creators[0].initials }}, et al. ({{ mention._source.dc.publicationYear }}) {{ mention._source.dc.title }} {{ mention._source.dc.publishers[0].name }}, {{ mention._source.dc.publishers[0].volume }}({{ mention._source.dc.publishers[0].issue }}), {{ mention._source.dc.publishers[0].pagination }}. (PMID:{{ mention._id.replace('PMID:', '') }})

Checkfor all resource mentions.

Collaborator Network

A list of researchers who have used the resource and an author search tool

Find mentions based on location


{{ ctrl2.mentions.errors.location }}

A list of researchers who have used the resource and an author search tool. This is available for resources that have literature mentions.

Ratings and Alerts

No rating or validation information has been found for SortMeRNA.

No alerts have been found for SortMeRNA.

Data and Source Information