Saccharomyces cerevisiae Pathway: tryptophan degradation
Inferred from experiment

If an enzyme name is shown in bold, there is experimental evidence for this enzymatic activity.

Synonyms: trp degradation, Ehrlich pathway, fusel alcohol biosynthesis, indole-3-ethanol biosynthesis

Superclasses: Degradation/Utilization/AssimilationAmino Acid DegradationProteinogenic Amino Acid DegradationL-tryptophan Degradation

Summary:
While Saccharomyces cerevisiae can use most amino acids as their sole nitrogen source, they can only use a few amino acids as a carbon source to support growth [Large86, Cooper82]. This is in contrast to most eukaryotes and some fungi, which can metabolize amino acids completely, utilizing them as sole sources of carbon and nitrogen [Stryer88, Large86]. S. cerevisiae degrade the aromatic amino acids (tryptophan, phenylalanine, and tyrosine) and the branched-chain amino acids (valine, leucine, and iso-leucine) via the Ehrlich pathway [Sentheshanmugan60, Dickinson00]. This pathway is comprised of the following steps: 1) deamination of the amino acid to the corresponding alpha-keto acid; 2) decarboxylation of the resulting alpha-keto acid to the respective aldehyde; and, 3) reduction of the aldehyde to form the corresponding long chain or complex alcohol, known as a fusel alcohol or fusel oil [Dickinson00, Large86]. Fusel alcohols are important flavor and aroma compounds in yeast-fermented food products and beverages (as reported in [terSchure98].

The primary aminotransferase in tryptophan degradation is postulated to be Aro9p [Kradolfer82]. In vitro studies demonstrated that Aro9p is active with phenylpyruvate, pyruvate, or p-hydroxyphenylpyruvate, but not 2-oxoglutarate as the amino acceptor [Kradolfer82]. Aro9p is induced by aromatic amino acids and is subject to nitrogen regulation [Kradolfer82, Iraqui99]. The decarboxylase encoding gene ARO10 appears to be transcriptionally regulated in a similar fashion [Iraqui99]. Gap1p, a general amino acid permease, and Wap1p, an inducible amino acid permease with wide substrate specificity, appear to be the main uptake systems for utilizing aromatic amino acids [Iraqui99].

Citations: [Dickinson03, Urrestarazu98, Iraqui98]

Locations of Mapped Genes:

Credits:
Revised 08-May-2008 by Krieger C, Saccharomyces Genome Database


References

Cooper82: Cooper, TG (1982). "Nitrogen Metabolism in Saccharomyces cerevisiae." In: Strathern JN, Jones EW, Broach JR (eds) The Molecular Biology of the Yeast Saccharomyces, Metabolism and Gene Expression. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp 39-99.

Dickinson00: Dickinson JR (2000). "Pathways of leucine and valine catabolism in yeast." Methods Enzymol 324;80-92. PMID: 10989420

Dickinson03: Dickinson JR, Salgado LE, Hewlins MJ (2003). "The catabolism of amino acids to long chain and complex alcohols in Saccharomyces cerevisiae." J Biol Chem 278(10);8028-34. PMID: 12499363

Iraqui98: Iraqui I, Vissers S, Cartiaux M, Urrestarazu A (1998). "Characterisation of Saccharomyces cerevisiae ARO8 and ARO9 genes encoding aromatic aminotransferases I and II reveals a new aminotransferase subfamily." Mol Gen Genet 257(2);238-48. PMID: 9491083

Iraqui99: Iraqui I, Vissers S, Andre B, Urrestarazu A (1999). "Transcriptional induction by aromatic amino acids in Saccharomyces cerevisiae." Mol Cell Biol 19(5);3360-71. PMID: 10207060

Kradolfer82: Kradolfer P, Niederberger P, Hutter R (1982). "Tryptophan degradation in Saccharomyces cerevisiae: characterization of two aromatic aminotransferases." Arch Microbiol 133(3);242-8. PMID: 6763508

Large86: Large PJ (1986). "Degradation of Organic Nitrogen Compounds by Yeasts." Yeast (2) 1-34.

Sentheshanmugan60: Sentheshanmuganathan S (1960). "The mechanism of the formation of higher alcohols from amino acids by Saccharomyces cerevisiae." Biochem J. 74:568-576.

Stryer88: Stryer L (1988). "Biochemistry (3rd ed.)." New York: W. H. Freeman and Company.

terSchure98: ter Schure EG, Flikweert MT, van Dijken JP, Pronk JT, Verrips CT (1998). "Pyruvate decarboxylase catalyzes decarboxylation of branched-chain 2-oxo acids but is not essential for fusel alcohol production by Saccharomyces cerevisiae." Appl Environ Microbiol 64(4);1303-7. PMID: 9546164

Urrestarazu98: Urrestarazu A, Vissers S, Iraqui I, Grenson M (1998). "Phenylalanine- and tyrosine-auxotrophic mutants of Saccharomyces cerevisiae impaired in transamination." Mol Gen Genet 257(2);230-7. PMID: 9491082

Other References Related to Enzymes, Genes, Subpathways, and Substrates of this Pathway

Latendresse13: Latendresse Mario (2013). "Computing Gibbs Free Energy of Compounds and Reactions in MetaCyc." Web.

Pronk96: Pronk JT, Yde Steensma H, Van Dijken JP (1996). "Pyruvate metabolism in Saccharomyces cerevisiae." Yeast 12(16);1607-33. PMID: 9123965

Vuralhan05: Vuralhan Z, Luttik MA, Tai SL, Boer VM, Morais MA, Schipper D, Almering MJ, Kotter P, Dickinson JR, Daran JM, Pronk JT (2005). "Physiological characterization of the ARO10-dependent, broad-substrate-specificity 2-oxo acid decarboxylase activity of Saccharomyces cerevisiae." Appl Environ Microbiol 71(6);3276-84. PMID: 15933030

Wehner93a: Wehner EP, Rao E, Brendel M (1993). "Molecular structure and genetic regulation of SFA, a gene responsible for resistance to formaldehyde in Saccharomyces cerevisiae, and characterization of its protein product." Mol Gen Genet 237(3);351-8. PMID: 8483449


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