Locus: AT1G01030
    
Representative Gene Model (?)   
AT1G01030.1
Gene Model Type    protein_coding
Other names:   
NGA3, NGATHA3
Description (?)   Member of the RAV family of DNA binding proteins. Contains B3 domain. Component of transcriptional regulatory complex directing stigma development
Other Gene Models (?)  
AT1G01030.2
(splice variant)  
Map Detail Image  

Center on AT1G01030 | Full-screen view

Annotations (?)  
category   relationship type (?)   keyword (?)
GO Biological Process   acts upstream of or within   flower development, leaf development, regulation of DNA-templated transcription, regulation of leaf morphogenesis
GO Biological Process   involved in   stigma development
GO Cellular Component   located in   nucleus
GO Molecular Function   enables   DNA-binding transcription factor activity, protein binding
Growth and Developmental Stages   expressed during   flowering stage, petal differentiation and expansion stage
Plant structure   expressed in   carpel, collective leaf structure, flower, flower pedicel, guard cell, petal, sepal, stamen
Annotation Detail
Sequence (?)   full length cDNA   full length CDS   full length genomic   protein
RNA Data  
 
One-channel Arrays  
array element
name (?)		 avg. signal
intensity (std. error) 		avg. signal
percentile (std. error)
261568_AT 19.306 (0.429) 22.487 (0.326)
 
Associated Transcripts (?)  
type number associated
EST ( 4 )
cDNA ( 2 )
BAR eFP Browser  
Chromosome   1
Protein Data (?)  
name   length(aa)   molecular weight   isoelectric point   INTERPRO domains
AT1G01030.1    358    40287.2    6.24    DNA-bd_pseudobarrel_sf:IPR015300
                B3_DNA-bd:IPR003340
                null:IPR044800
Plant Homologs (?)  
treeviewer phylogenes View complete family and tree
Arabidopsis paralogs (?)
AT1G13260(RAV1) , AT1G25560(EDF1) ...
Plant orthologs (?)
Eudicotyledons
Brassica napus1
Brassica rapa2
Capsicum annuum2
Erythranthe guttata1
Helianthus annuus3
Lactuca sativa2
Medicago truncatula1
Nicotiana tabacum4
Solanum lycopersicum2
Solanum tuberosum3
Spinacia oleracea1
Vitis vinifera2
Monocotyledons
Brachypodium distachyon3
Hordeum vulgare5
Musa acuminata12
Oryza sativa3
Setaria italica4
Sorghum bicolor6
Triticum aestivum13
Zea mays7
Zostera marina3
  
Other plants
Amborella trichopoda1
Chlamydomonas reinhardtii3
Klebsormidium nitens6
Marchantia polymorpha1
Nelumbo nucifera2
Physcomitrella patens2
Selaginella moellendorffii5
Search Gene Families   
EnsemblPlants    PhylomeDB
InParanoid Ortholog Groups    Phytozome
PANTHER    PLAZA
PhyloGenes
Map Locations
(?)		  
chrom map map type (?) coordinates orientation attrib
1 AGI nuc_sequence 11649 - 13714 bp reverse   details
Map Links (?)   MapViewer     Sequence Viewer     GBrowse     JBrowse
Polymorphism (?)
Showing 13 of 13 entries
  
name (?)   type (?)   polymorphism site   gene names   allele type (?)
FLAG_270B05   insertion   5'UTR   AT1G01030.2   unknown
FLAG_270B05   insertion   exon   AT1G01030.1   unknown
PERL0000051   substitution   exon   AT1G01030.1   unknown
PERL0000053   substitution   exon   AT1G01030.1   unknown
RATM11-4609-1_G   insertion   coding_region   AT1G01030.1, AT1G01030.2   unknown
RATM11-4609-1_H   insertion   coding_region   AT1G01030.1, AT1G01030.2   unknown
SAIL_232_E10   insertion   coding_region   AT1G01030.2   unknown
SAIL_232_E10   insertion   exon   AT1G01030.1   unknown
SALKseq_046278.1   insertion   coding_region   AT1G01030.1, AT1G01030.2   unknown
SALKseq_071943.1   insertion   5'UTR   AT1G01030.1, AT1G01030.2   unknown
ossowski_58   substitution   coding_region   AT1G01030.1   unknown
ossowski_60   substitution   5'UTR   AT1G01030.1   unknown
ossowski_62   substitution   3'UTR   AT1G01030.1   unknown
Germplasm
(?)
Showing 5 of 5 entries
  
name   polymorphisms   background   stock name
SALK_046278   SALK_046278.56.00.x; SALKseq_046278.0; SALKseq_046278.1; SALKseq_046278.2; SALKseq_046278.3     SALK_046278
images
None available  
phenotypes (?)
None available
SALK_071943   SALK_071943.25.30.x; SALKseq_071943.1     SALK_071943
images
None available  
phenotypes (?)
None available
SAIL_232_E10   SAIL_232_E10     CS872330
images
None available  
phenotypes (?)
None available
CS2104269       CS2104269
images
None available  
phenotypes (?)
None available
CS2104270       CS2104270
images
None available  
phenotypes (?)
None available
(European Users)
Clones (?)
(showing 12 of 12 entries)
  
Clone Name Aliases GenBank
Accession		 Vector
Type		 Stock Number
CATMA1A00030    plasmid  CD271609
CSHL_008882  AMR4844-99723987  plasmid  CSHL_008882
DKLAT1G01030    plasmid  DKLAT1G01030
TOPO-U11-A05    plasmid  TOPO-U11-A05
DEST-U11-A05    plasmid  DEST-U11-A05
HALO_TF-14_B06    plasmid  HALO_TF-14_B06
PADLOX-TF-11-A05    plasmid  PADLOX-TF-11-A05
PDBLOX-TF-11-A05    plasmid  PDBLOX-TF-11-A05
GSLTFB91ZD02    BX814729
 
CATMA1A00030D    plasmid 
FJ873733    FJ873733
 
PER8GW_AT1G01030.1    plasmid 
External Link (?)   
Epigenomics
  Danforth Center Small RNA/PARE/Methylation
Expression/Localization
  AraQTL
  ATTED-II
  eFP Browser
  Eukaryotic Promoter Database (EPD)
  The Subcellular Location of Proteins in Arabidopsis Database (SUBA)
  TraVA:Transcription Variation Analysis
Gene Families   Links moved to Gene Families band [show me where]
Genomics
  AceView
  Gramene
  MIPS
  NCBI-Entrez Gene
  Thalemine at BAR
Interactions
  BioGRID
Other
  BAR ePlant
  BAR ePlant Molecule View
Polymorphisms/Alleles/Variants
  Salk SNP Viewer
  T-DNA Express
Proteomics
  AlphaFold Protein Structure Database
  Functional Analysis Tools for Post-Translational Modifications(FAT-PTM)
  Plant Proteome Database
  Plant PTM Viewer
Publications
  EVEX
Reagents
  Agrisera (antibody)
  Arabidopsis Biological Resource Center (ABRC) (Seed/DNA)
  PhytoAB (antibody)
  RIKEN BioResource Research Center (Seed/DNA)
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     associated loci     date
Ballester, P, Martínez-Godoy, M A, Ezquerro, M, Navarrete-Gómez, M, Trigueros, M, Rodríguez-Concepción, M, Ferrándiz, C
A transcriptional complex of NGATHA and bHLH transcription factors directs stigma development in Arabidopsis
     THE PLANT CELL     AT1G01030  AT2G34650  AT2G46870  AT3G14370  AT3G50330  AT3G61970  AT4G00120  AT4G01500  AT4G16360  AT4G34270  AT4G36930  AT5G09750  AT5G20240  AT5G60910  AT5G67060      2021
Alvarez, J P, Furumizu, C, Efroni, I, Eshed, Y, Bowman, J L
Active suppression of a leaf meristem orchestrates determinate leaf growth
     ELIFE     AT1G01030  AT1G53230  AT2G28610  AT2G46870  AT3G15030  AT3G61970  AT4G01500  AT5G16560      2016
Ballester, P, Navarrete-Gómez, M, Carbonero, P, Oñate-Sánchez, L, Ferrándiz, C
Leaf expansion in Arabidopsis is controlled by a TCP-NGA regulatory module likely conserved in distantly related species
     PHYSIOLOGIA PLANTARUM     AT1G01030  AT1G53230  AT4G18390      2015
Ding, Y, Liu, N, Virlouvet, L, Riethoven, J J, Fromm, M, Avramova, Z
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana
     BMC PLANT BIOLOGY     AT1G01010  AT1G01030  AT1G01060  AT1G01250  AT1G01520  AT1G02220  AT1G02230  AT1G02340  AT1G02610  AT1G03790  AT1G05710  AT1G06040  AT1G06160  AT1G06180  AT1G06850  AT1G06910  AT1G08810  AT1G10120  AT1G10200  AT1G10585  more...     2013
Meinke, D W
A survey of dominant mutations in Arabidopsis thaliana
     TRENDS IN PLANT SCIENCE     AT1G01030  AT1G01060  AT1G01380  AT1G03445  AT1G04240  AT1G04250  AT1G04550  AT1G04820  AT1G05260  AT1G06950  AT1G09570  AT1G12610  AT1G12980  AT1G14920  AT1G15020  AT1G15750  AT1G17060  AT1G17950  AT1G18350  AT1G18570  more...     2012
Elena R Alvarez-Buylla， Mariana Benítez， Adriana Corvera-Poiré， Álvaro Chaos Cador， Stefan de Folter， Alicia Gamboa de Buen， Adriana Garay-Arroyo， Berenice García-Ponce， Fabiola Jaimes-Miranda， Rigoberto V Pérez-Ruiz, Alma Piñeyro-Nelson and Yara E Sánchez-Corrales
Flower Development
     THE ARABIDOPSIS BOOK     AT1G01030  AT1G01040  AT1G08465  AT1G11130  AT1G13400  AT1G17560  AT1G19850  AT1G20330  AT1G23080  AT1G23420  AT1G30330  AT1G30490  AT1G30950  AT1G32240  AT1G32770  AT1G43850  AT1G48410  AT1G52150  AT1G62360  AT1G65380  more...     2010
Hanada, K, Sawada, Y, Kuromori, T, Klausnitzer, R, Saito, K, Toyoda, T, Shinozaki, K, Li, W H, Hirai, M Y
Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana
     MOLECULAR BIOLOGY AND EVOLUTION     AT1G01010  AT1G01030  AT1G01060  AT1G01120  AT1G01190  AT1G01280  AT1G01350  AT1G01390  AT1G01420  AT1G01430  AT1G01480  AT1G01490  AT1G01580  AT1G01590  AT1G01610  AT1G01620  AT1G01660  AT1G01670  AT1G01680  AT1G01700  more...     2010
Ikeda, Miho, Ohme-Takagi, Masaru
A Novel Group of Transcriptional Repressors in Arabidopsis.
     PLANT AND CELL PHYSIOLOGY     AT1G01030  AT1G13260  AT1G25560  AT1G30810  AT1G34310  AT1G34390  AT1G34410  AT1G35240  AT1G35520  AT1G35540  AT1G46264  AT1G68840  AT2G34880  AT2G36080  AT2G37650  AT2G41690  AT2G46870  AT3G11580  AT3G16350  AT3G25730  more...     2009
Trigueros, Marina, Navarrete-Gómez, Marisa, Sato, Shusei, Christensen, Sioux K, Pelaz, Soraya, Weigel, Detlef, Yanofsky, Martin F, Ferrándiz, Cristina
The NGATHA Genes Direct Style Development in the Arabidopsis Gynoecium.
     THE PLANT CELL     AT1G01030  AT3G51060  AT4G13260  AT5G11320      2009
Ascencio-Ibanez, Jose Trinidad, Sozzani, Rosangela, Lee, Tae-Jin, Chu, Tzu-Ming, Wolfinger, Russell D, Cella, Rino, Hanley-Bowdoin, Linda
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
     PLANT PHYSIOLOGY     AT1G01010  AT1G01030  AT1G01040  AT1G01060  AT1G01080  AT1G01090  AT1G01120  AT1G01140  AT1G01190  AT1G01290  AT1G01300  AT1G01320  AT1G01340  AT1G01350  AT1G01430  AT1G01470  AT1G01550  AT1G01560  AT1G01620  AT1G01725  more...     2008
Hansson, Bengt, Kawabe, Akira, Preuss, Sonja, Kuittinen, Helmi, Charlesworth, Deborah
Comparative gene mapping in Arabidopsis lyrata chromosomes 1 and 2 and the corresponding A. thaliana chromosome 1: recombination rates, rearrangements and centromere location.
     GENETICAL RESEARCH     AT1G01030  AT1G03560  AT1G10980  AT1G32860  AT1G36310  AT1G36370  AT1G36730  AT1G42470  AT1G43980  AT1G56000  AT1G57820  AT1G59720  AT1G62310  AT1G62520  AT1G64610  AT1G65450  AT4G08590      2006
Alvarez, John Paul, Pekker, Irena, Goldshmidt, Alexander, Blum, Eyal, Amsellem, Ziva, Eshed, Yuval
Endogenous and Synthetic MicroRNAs Stimulate Simultaneous, Efficient, and Localized Regulation of Multiple Targets in Diverse Species.
     THE PLANT CELL     AT1G01030  AT2G46870  AT3G61970  AT4G01500  AT5G07680  AT5G61430      2006
Borsics, Tamás, Webb, David, Andeme-Ondzighi, Christine, Staehelin, L, Christopher, David
The cyclic nucleotide-gated calmodulin-binding channel AtCNGC10 localizes to the plasma membrane and influences numerous growth responses and starch accumulation in Arabidopsis thaliana.
     PLANTA     AT1G01030  AT1G01260  AT1G01340  AT1G01790  AT1G01960  AT1G02010  AT1G02080  AT4G01010      2006
Hu, W,Wang, Y,Bowers, C,Ma, H
Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis.
     PLANT MOLECULAR BIOLOGY     AT1G01010  AT1G01020  AT1G01030  AT1G01100  AT1G01250  AT1G04300  AT1G04440  AT1G04820  AT1G06230  AT1G06840  AT1G08320  AT1G11410  AT1G12680  AT1G15360  AT1G17040  AT1G17200  AT1G18080  AT1G18840  AT1G20130  AT1G22780  more...     2003
View Complete List   (15 of 15 displayed)
Date last modified    2023-10-04
TAIR Accession    Locus:2200950