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Taxonomy browser (Halobacterium salinarum)

Halobacterium salinarum

Taxonomy ID: 2242 (for references in articles please use NCBI:txid2242)
current name
Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (Approved Lists 1980) emend. Gruber et al. 2004, nom. approb. 1)
type strain of Halobacterium salinarum: ATCC:33171, CIP:104033, DSM:3754, JCM:8978, NBRC:102687, NCIMB:764, NRC:34002, VKM:B-1769, CGMCC:1.3519
includes:
Halobacterium sp. BRTH1
Halobacterium sp. HPC1-2
NCBI BLAST name: euryarchaeotes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacillus halobius ruber" Klebahn 1919, effective name 2)
heterotypic synonym
"Pseudomonas salinaria" Harrison and Kennedy 1922, effective name 2)
heterotypic synonym
"Serratia salinaria" (Harrison and Kennedy 1922) Bergey et al. 1923, effective name 2)
heterotypic synonym
"Serratia cutirubrum" Lochhead 1934, effective name 2)
heterotypic synonym
Halobacterium salinarium
homotypic synonym:
"Flavobacterium (subgen. Halobacterium) salinarium" (Harrison and Kennedy 1922) Elazari-Volcani 1940, effective name 2)
heterotypic synonym
"Bacterium halobium" Petter 1931, effective name 2)
heterotypic synonym
"Flavobacterium (subgen. Halobacterium) halobium" (Petter 1931) Elazari-Volcani 1940, effective name 2)
heterotypic synonym
"Halobacter salinaria" (Harrison and Kennedy 1922) Anderson 1954, effective name 2)
heterotypic synonym
Halobacterium cutirubrum (Lochhead 1934) Elazari-Volcani 1957 (Approved Lists 1980), nom. approb. 1)
type strain of Halobacterium cutirubrum: ATCC:33170, DSM:669, NCCB:81095, NRC:34001, VKM:B-1808
heterotypic synonym
Halobacterium halobium (Petter 1931) Elazari-Volcani 1957 (Approved Lists 1980), nom. approb. 1)
type strain of Halobacterium halobium: NCCB:33035, NCIMB:8720
heterotypic synonym
Halobacterium piscisalsi Yachai et al. 2008
type strain of Halobacterium piscisalsi: BCC:24372, JCM:14661, PCU:302, personal::HPC1-2
Lineage( full )
cellular organisms; Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 4,070 3,614 95
Protein 36,991 23,027 -
Structure 210 110 -
Genome 1 1 -
Popset 23 23 -
Conserved Domains 1 - -
GEO Datasets 2,665 540 -
PubMed Central 2,668 2,668 -
Gene 19,204 10,224 -
SRA Experiments 291 227 -
Protein Clusters 1,869 1,869 -
Identical Protein Groups 19,177 18,344 -
BioProject 137 35 -
BioSample 521 453 5
Assembly 29 25 2
PubChem BioAssay 2 2 -
Taxonomy 8 1 -

Notes:

Comments and References:

image:Halobacterium salinarum
H. salinarum = H. cutirubrum = H. halobium
From the LBSN web site:"Note: No properties that differentiate Halobacterium cutirubrum (Lochhead 1934) Elazari-Volcani 1957 (Approved Lists 1980) from Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (ApprovedLists 1980) and justify assignment of these strains to separate species has been described.
Elazari-Volcani B (1940)
Elazari-Volcani, B. "Studies on the microflora of the Dead Sea." Doctoral thesis (1940). Hebrew University, Jerusalem, pp. 1-116 and i-xiii. [No PubMed record available.]
Elazari-Volcani B (1957)
Elazari-Volcani, B. "Genus XII. Halobacterium Elazari-Volcani, 1940." In: R.S. Breed, E.G.D. Murray, and N.R. Smith (ed.), Bergey's Manual of Determinative Bacteriology, seventh edition (1957). The Williams & Wilkins Co., Baltimore, pp. 207-212. [No PubMed record available.]
Gruber C et al. (2004)
Gruber, C., Legat, A., Pfaffenhuemer, M., Radax, C., Weidler, G., Busse, H.-J., and Stan-Lotter, H. "Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarum." Extremophiles (2004) 8:431-439. Published online 30 July 2004. DOI: 10.1007/s00792-004-0403-6
Harrison FC & Kennedy ME (1922)
Harrison, F.C., and Kennedy, M.E. "The red discolouration of cured codfish." Proc. Trans. R. Soc. Can. Sect. V (1922) 16:101-152. [No PubMed record available.]
Klebahn H (1919)
Klebahn, H. "Die Schadlinge des Klippfisches. Ein Beitrag zur Kenntnis der salzliebenden Organismen." Mitt. Inst. Allg. Bot. Hambg. (1919) 4:11-69. [No PubMed record available.]
List of Changes in Taxonomic Opinion No. 2 (2005), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.63884-0
Euzeby, J. "List of Changes in Taxonomic Opinion no. 2." Int. J. Syst. Evol. Microbiol. (2005) 55:1403-1404.
Lochhead AG (1934)
Lochhead, A.G. "Bacteriological studies on the red discolouration of salted hides." Can. J. Res. (1934) 10:275-286. [No PubMed record available.]
Minegishi H et al. (2012b)
Minegishi, H., Echigo, A., Shimane, Y., Kamekura, M., Tanasupawat, S., Visessanguan, W., and Usami, R. "Halobacterium piscisalsi Yachai et al. 2008 is a later heterotypic synonym of Halobacterium salinarum Elazari-Volcani 1957." Int. J. Syst. Evol. Microbiol. (2012) 62:2160-2162.
Petter JFM (1931)
Petter, J.F.M. "On bacteria of salted fish." Proc. K. Ned. Akad. Wet. Amsterdam (1931) 34:1417-1423. [No PubMed record available.]
Pfeiffer F et al. (2019), other link:https://mra.asm.org/content/8/28/e00429-19
Pfeiffer, F., Marchfelder, A., Habermann, B., and Dyall-Smith, M.L. "The genome sequence of the Halobacterium salinarum type strain is closely related to that of laboratory strains NRC-1 and R1." Microbiol. Resour. Announc. (2019) 8:e00429-19.
Skerman VBD et al. (1980) (Halobacterium cutirubrum)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Skerman VBD et al. (1980) (Halobacterium halobium)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Skerman VBD et al. (1980) (Halobacterium salinarum)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Ventosa A & Oren A (1996)
Ventosa, A., and Oren, A. "Halobacterium salinarum nom. corrig., a name to replace Halobacterium salinarium (Elazari-Volcani) and to include Halobacterium halobium and Halobacterium cutirubrum." Int. J. Syst. Bacteriol. (1996) 46:347. [No PubMed record available.]
Yachai M et al. (2008)
Yachai, M., Tanasupawat, S., Itoh, T., Benjakul, S., Visessanguan, W., and Valyasevi, R. "Halobacterium piscisalsi sp. nov., from fermented fish (pla-ra) in Thailand." Int. J. Syst. Evol. Microbiol. (2008) 58:2136-2140.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Halobacterium salinarum meta-databases BacDive
2 records from this provider organism-specific BioCyc
Halobacterium cutirubrum (Lochhead 1934) Elazari-Volcani 1957 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
3 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Halobacterium salinarum culture/stock collections Global Catalogue of Microorganisms
6 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Halobacterium halobium taxonomy/phylogenetic TreeBase
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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