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| Status |
Public on Dec 09, 2018 |
| Title |
INDETERMINATE-DOMAIN 4 (IDD4) coordinates immune responses with plant-growth in Arabidopsis thaliana. |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We report the transcriptome composition of idd mutant with and without flg22 treatment compared to WT (ColO). Furthermore, we provide transcriptome data of a IDD4ox line and IDD4-phospho-peptide modified versions without treatment compared to WT (ColO), respectively. In order to identify the genomic regions targeted by IDD4 in vivo, Chromatin-Immunoprecipitation (ChIP) was performed followed by deep sequencing on the Illumina High-Sequencing2000 platform (SEQ).
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| Overall design |
Illumina high-sequencing plateform was used to analyse the transcriptome composition of the different genetic backgrounds (under treated and untreated conditions), and to analyse the chromatin fragments bound on IDD4
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| Contributor(s) |
Voelz R, Kim S, Mi J, Veluchamy A, Mariappan KG, Rayapuram N, Daviere J, Achard P, Al-Babili S, Benhamed M, Al-Babili S, Hirt H |
| Citation(s) |
30677094 |
| Submission date |
Sep 17, 2018 |
| Last update date |
Feb 15, 2019 |
| Contact name |
Prof. Heribert HIRT |
| Organization name |
KAUST
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| Street address |
4700 KAUST
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| City |
Thuwal |
| ZIP/Postal code |
239556900 |
| Country |
Saudi Arabia |
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| Platforms (1) |
| GPL21785 |
Illumina HiSeq 4000 (Arabidopsis thaliana) |
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| Samples (28)
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| Relations |
| BioProject |
PRJNA491484 |
| SRA |
SRP161929 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE120068_RAW.tar |
275.3 Mb |
(http)(custom) |
TAR (of WIG) |
| GSE120068_fpkm.xlsx |
2.5 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
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