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| Status |
Public on May 16, 2019 |
| Title |
Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome |
| Organism |
Streptomyces clavuligerus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We obtained the high-quality genome sequence of S. clavuligerus ATCC 27064, and determined genome-wide TSSs. Then, RNA-Seq and ribosome profiling were additionally exploited to reveal fundamental regulatory elements for transcription and translation.
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| |
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| Overall design |
Transcriptome (RNA-seq), translatome (ribosome profiling), primary transcriptome (dRNA-seq, pooled) data of Streptomyces clavuligerus ATCC 27064 at four different growth phases in duplicates using Illumina HiSeq
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| |
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| Contributor(s) |
Hwang S, Lee N, Jeong Y, Lee Y, Kim W, Cho S, Palsson BO, Cho B |
| Citation(s) |
31131406, 32385251, 33947798 |
| Submission date |
Mar 13, 2019 |
| Last update date |
Aug 11, 2021 |
| Contact name |
Soonkyu Hwang |
| E-mail(s) |
geager@kaist.ac.kr
|
| Organization name |
KAIST
|
| Department |
Biological Sciences
|
| Street address |
291 Daehakro, Yuseong-gu
|
| City |
Daejeon |
| ZIP/Postal code |
34141 |
| Country |
South Korea |
| |
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| Platforms (1) |
| GPL26293 |
Illumina HiSeq 2000 (Streptomyces clavuligerus ATCC 27064) |
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| Samples (20)
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| Relations |
| BioProject |
PRJNA526821 |
| SRA |
SRP188290 |
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