URL: https://software.broadinstitute.org/gatk/
Proper Citation: GATK (RRID:SCR_001876)
Description: A software package to analyze next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. This software library makes writing efficient analysis tools using next-generation sequencing data very easy, and second it's a suite of tools for working with human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner. (entry from Genetic Analysis Software)
Abbreviations: GATK
Synonyms: Genome Analysis ToolKit
Resource Type: data analysis software, software application, software toolkit, software library, data processing software, software resource
Defining Citation: PMID:21478889
Keywords: gene, genetic, genomic, next-generation resequencing, bio.tools
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