URL: http://hmmer.janelia.org/
Proper Citation: Hmmer (RRID:SCR_005305)
Description: Tool for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.
Abbreviations: HMMER
Synonyms: HMMER - biosequence analysis using profile hidden Markov models
Resource Type: analysis service resource, software application, service resource, production service resource, data processing software, data analysis service, data analysis software, software resource
Defining Citation: PMID:21593126, DOI:10.1093/bioinformatics/14.9.755
Keywords: homolog, protein sequence, source code, FASEB list
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