URL: http://cole-trapnell-lab.github.io/monocle-release/docs/
Proper Citation: Monocle2 (RRID:SCR_016339)
Description: Software package for analyzing single cell gene expression, classifying and counting cells, performing differential expression analysis between subpopulations of cells, and reconstructing cellular trajcectories. Works well with very large single-cell RNA-Seq experiments containing tens of thousands of cells or more. Used in computational analysis of gene expression data in single cell gene expression studies to profile transcriptional regulation in complex biological processes and highly heterogeneous cell populations.
Synonyms: Monocle 2
Resource Type: software resource, software toolkit, software application, data analysis software, data processing software
Defining Citation: PMID:24658644
Keywords: analysis, heterogenous, population, single, cell, gene, expression, data, large, single-cell RNA-Seq, transcriptional, regulation, heterogen
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