URL: https://data.broadinstitute.org/alkesgroup/Eagle/
Proper Citation: Eagle (RRID:SCR_015991)
Description: Software package for statistical estimation of haplotype phase either within a genotyped cohort or using a phased reference panel in large scale sequencing. The package includes Eagle1 (to harness identity-by-descent among distant relatives to rapidly call phase using a fast scoring approach) and Eagle2 (to analyze a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.
Synonyms: Bio-eagle, Eagle1, Eagle2
Resource Type: software resource, software toolkit
Defining Citation: PMID:27694958, PMID:27270109
Keywords: hmm, hidden markov model, statistic, estimation, haplotype, phase, reference, panel, sequencing, algorithm, analysis, probability
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