Proper Citation: PLUMED 2 (RRID:SCR_021952)
Description: Open source, community developed library that provides range of different methods, which include enhanced sampling algorithms, free energy methods, tools to analyze vast amounts of data produced by molecular dynamics simulations. PLUMED 2 is complete rewrite of the code in object oriented programming language C plus plus. This new version introduces greater flexibility and greater modularity, which both extends its core capabilities and makes it far easier to add new methods and CVs. It also has simpler interface with the MD engines and provides single software library containing both tools and core facilities.
Synonyms: PLUgin for MolEcular Dynamics 2
Resource Type: software toolkit, software resource, software library
Defining Citation: DOI:10.1016/j.cpc.2013.09.018
Keywords: Molecular dynamics analysis, enhanced sampling algorithms, free energy methods, PLUMED
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