Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0009634 (speA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0009634 showshow history
Names
speA JW2905 ECK2933 b2938
Product
biosynthetic arginine decarboxylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3083935 3085911 1977 659
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0001077
EnteroFam0009634: Trusted threshold=1957.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002985 (IPR002985 Arginine decarboxylase) Apr 2008
Automated Process Approved IPR000183 (IPR000183 Ornithine/DAP/Arg decarboxylase) Apr 2008
Automated Process Approved IPR022644 (IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal) Jul 2018
Automated Process Approved IPR009006 (IPR009006 Alanine racemase/group IV decarboxylase, C-terminal) Jul 2018
Automated Process Approved IPR029066 (IPR029066 PLP-binding barrel) Jul 2018
Automated Process Approved PF02784 (PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008295 spermidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006527 arginine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008792 arginine decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name speA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK2933 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW2905 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b2938 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product biosynthetic arginine decarboxylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name biosynthetic arginine decarboxylase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name arginine decarboxylase, PLP-binding, biosynthetic Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name ADC Published Annotation - PubMed ID: 15583399
Reference: Yersinia pestis 		Sep 2007
Protein Family
Person Approved EnteroFam EnteroFam0009634: Trusted threshold=1957.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0001077
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal Protein Sequence Similarity - InterPro Domain: IPR022644
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR009006
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000183 Ornithine/DAP/Arg decarboxylase Protein Sequence Similarity - InterPro Domain: IPR000183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029066 PLP-binding barrel Protein Sequence Similarity - InterPro Domain: IPR029066
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002985 Arginine decarboxylase Protein Sequence Similarity - InterPro Domain: IPR002985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Protein Sequence Similarity - PFAM Model Name: PF02784
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 4.1.1.19 Published Annotation - Swiss-Prot Accession Number: P21170 Feb 2006
Person Uncurated MultiFun 1.7.14 (metabolism; central intermediary metabolism; polyamine biosynthesis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P21170 Published Annotation - Swiss-Prot Accession Number: P21170 Jan 2005
Automated Process Approved db xref GeneID:947432 Published Annotation - Entrez Gene Database ID: 947432
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1789307 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P21170 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0009634 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10959 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Polyamine biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note biosynthetic arginine decarboxylase; GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006596 - polyamine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC75975.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006527 arginine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008295 spermidine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006596 polyamine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000183
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008792 arginine decarboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002985
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0001077 speA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001641 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000861 speA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000894 speA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001517 speA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000923 speA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0003002 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003659 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003630 speA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000296 speA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0000809 speA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0004535 speA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0004981 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0015188 speA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0003723 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004743 speA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0305072 speA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000726 speA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002925 speA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002609 speA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005897 speA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002963 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008204 speA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0002937 speA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0001337 speA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0006248 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005691 speA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008249 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0079685 speA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0003373 speA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0003893 speA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005732 speA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007257 speA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003396 speA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0007717 speA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004317 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007579 speA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006097 speA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008354 speA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005743 speA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009077 speA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006089 speA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006880 speA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005861 speA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006373 speA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005685 speA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005268 speA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006114 speA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0027956 speA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006913 speA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0007777 speA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0002746 speA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0003009 speA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0003319 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0003450 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0003199 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003268 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003079 speA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0133857 speA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001113 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003336 speA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003087 speA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001409 speA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003383 speA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001577 speA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004992 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0002460 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0002729 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0002490 speA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0001514 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0003304 speA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0000898 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010949 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0000108 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0291193 speA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0006311 speA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064234 speA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002834 speA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003175 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003812 speA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008924 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0145222 speA CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004918 speA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007416 speA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004785 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003545 speA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007682 speA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0009560 speA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009046 speA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008790 speA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007684 speA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006645 speA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005642 speA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008603 speA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006800 speA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007691 speA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005379 speA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002978 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002949 speA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003865 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007846 speA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008281 speA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007331 speA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005539 speA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0111931 speA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0084718 speA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0003735 speA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0099611 speA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006169 speA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006255 speA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004792 speA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0001736 speA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265449 speA CDS
Person Approved Go view Shigella boydii 227 ADV-0003344 speA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0008785 speA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003890 speA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0003573 speA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0074316 speA CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0089180 speA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003192 speA CDS
Person Approved Go view Shigella sonnei 046 ADD-0003377 speA CDS
Person Uncurated Go view Trabulsiella guamensis ATCC 49490 [T] APH-0002981 speA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003708 VCA0815 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0001784 speA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003088 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009901 speA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001696 speA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003851 speA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002241 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242806 speA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007471 speA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000417 speA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006718 speA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002421 speA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118352 speA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006712 speA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004915 speA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004177 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006577 speA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007994 speA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033082 speA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007875 speA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003763 speA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000692 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006251 speA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004787 speA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003310 speA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003980 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000991 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0007377 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002439 speA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20985mutantTn5 InsertionRequest the StrainABE-0009634speAspeA::Tn5KAN-I-SceI at position 526 in Plus orientation ,+ pKD460Blattner Laboratory
FB20986mutantTn5 InsertionRequest the StrainABE-0009634speAspeA::Tn5KAN-I-SceI at position 526 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3078935 to 3090911
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0009623cmtBCDScomplement30788873079330Downstream
ABE-0009625tktACDScomplement30796443081635Downstream
ABE-0009629loiPCDSforward30819133082671Downstream
ABE-0285560repeat_regionforward30826903082836Downstream
ABE-0009632speBCDScomplement30828773083797Downstream
ABE-0009634speACDScomplement30839353085911Matches
ABE-0009638yqgBCDScomplement30859203086051Upstream
ABE-0285745yqgGCDScomplement30861453086288Upstream
ABE-0009643yqgCCDSforward30861873086402Upstream
ABE-0009650metKCDSforward30867063087860Upstream
ABE-0285561repeat_regionforward30879123087937Upstream
ABE-0009654galPCDSforward30882843089678Upstream
ABE-0009657yggICDSforward30897553090252Upstream
ABE-0009661endACDSforward30903473091054Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.