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Report for CCDS13573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13573.1 Public Homo sapiens 21 MRPL39 24 110 108 CCDS HistoryNCBI Gene:54148Re-query CCDS DB by CCDS ID:13573.1Re-query CCDS DB by GeneID:54148See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13573.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352957.9 ENSP00000284967.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000352957.9Link to Ensembl Protein Viewer:ENSP00000284967.7Re-query CCDS DB by Nucleotide ID:ENST00000352957Re-query CCDS DB by Protein ID:ENSP00000284967
Original member Current member NCBI NM_017446.4 NP_059142.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017446.4Link to Protein Sequence:NP_059142.3Re-query CCDS DB by Nucleotide ID:NM_017446Re-query CCDS DB by Protein ID:NP_059142Link to BLAST:NP_059142.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059142.3 338 Q9NYK5-1 338 100% 0 0

Chromosomal Locations for CCDS 13573.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 25585707 25585754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25588835 25588882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25592812 25592965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25593893 25593958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25597302 25597414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25599799 25599866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25601368 25601467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25603796 25603935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25606449 25606655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 25607403 25607475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGAGGCGCTGGCCATGGGTTCCCGGGCGCTGCGGCTCTGGCTGGTCGCACCCGGTGGCGGGATCAAAT
GGAGATTTATAGCAACATCGTCAGCTTCTCAGCTGTCACCGACAGAATTGACAGAAATGCGGAATGATCT
CTTTAATAAAGAGAAAGCCAGGCAGTTATCATTAACTCCCCGAACTGAGAAGATAGAAGTTAAGCATGTT
GGGAAAACTGACCCCGGTACTGTCTTCGTGATGAATAAAAACATTTCAACTCCCTACAGTTGTGCCATGC
ATTTAAGCGAGTGGTATTGCAGGAAGTCCATTCTGGCTCTGGTGGATGGACAGCCTTGGGACATGTATAA
GCCTTTAACAAAGTCCTGTGAAATTAAATTTCTTACTTTCAAAGATTGTGATCCAGGAGAAGTGAATAAG
GCATATTGGCGTTCCTGTGCTATGATGATGGGCTGTGTGATAGAGAGGGCATTCAAAGATGAATATATGG
TCAATTTGGTCAGAGCTCCAGAAGTTCCTGTAATTTCTGGTGCCTTCTGTTATGACGTAGTTTTGGATAG
CAAACTTGATGAGTGGATGCCAACAAAAGAGAACTTACGTTCCTTCACAAAAGATGCTCATGCTTTAATT
TATAAAGATCTTCCATTTGAAACTCTGGAAGTTGAAGCAAAAGTGGCATTGGAAATATTTCAACACAGCA
AGTACAAAGTAGATTTCATAGAAGAGAAGGCATCTCAGAACCCTGAGAGAATAGTCAAGCTACACAGAAT
AGGTGACTTCATTGATGTGAGTGAGGGCCCTCTTATTCCAAGAACAAGTATTTGTTTCCAGTATGAAGTA
TCAGCAGTTCACAATCTTCAACCCACCCAGCCAAGTCTCATACGAAGATTCCAGGGCGTGTCTTTACCTG
TTCACTTAAGAGCACATTTTACAATATGGGATAAGCTATTGGAAAGATCTCGGAAAATGGTAACTGAAGA
TCAAAGTAAAGCAACAGAGGAATGTACATCTACCTAA

Translation (338 aa):
MEALAMGSRALRLWLVAPGGGIKWRFIATSSASQLSPTELTEMRNDLFNKEKARQLSLTPRTEKIEVKHV
GKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLTKSCEIKFLTFKDCDPGEVNK
AYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFCYDVVLDSKLDEWMPTKENLRSFTKDAHALI
YKDLPFETLEVEAKVALEIFQHSKYKVDFIEEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEV
SAVHNLQPTQPSLIRRFQGVSLPVHLRAHFTIWDKLLERSRKMVTEDQSKATEECTST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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