CHEBI:8988 - SN-38

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ChEBI Name SN-38
ChEBI ID CHEBI:8988
Definition A member of the class of pyranoindolizinoquinolines that is (4S)-pyrano[3',4':6,7]indolizino[1,2-b]quinoline-3,14-dione bearing two additional ethyl substituents at positions 4 and 11 as well as two additional hydroxy substituents at positions 4 and 9. It is the active metabolite of irinotecan and is ~1000 times more active than irinotecan itself.
Stars This entity has been manually annotated by the ChEBI Team.
Supplier Information ChemicalBook:CB5320664, eMolecules:2726126, Selleckchem:sn-38, ZINC000004099013
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SN-38 is an antineoplastic drug. It is the active metabolite of irinotecan (an analog of camptothecin - a topoisomerase I inhibitor) but has 1000 times more activity than irinotecan itself. In vitro cytotoxicity assays show that the potency of SN-38 relative to irinotecan varies from 2- to 2000-fold. SN38 is formed via hydrolysis of irinotecan by carboxylesterases and metabolized via glucuronidation by UGT1A1. The variant of UGT1A1 in ~10% of Caucasians which leads to poor metabolism of SN-38 predicts irinotecan toxicity, as it is then less easily excreted from the body in its SN-38 glucuronide form. SN-38 and its glucuronide are lost into the bile and intestines. It can cause the symptoms of diarrhoea and myelosuppression experienced by ~25% of the patients administered irinotecan.
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Formula C22H20N2O5
Net Charge 0
Average Mass 392.411
Monoisotopic Mass 392.13722
InChI InChI=1S/C22H20N2O5/c1-3-12-13-7-11(25)5-6-17(13)23-19-14(12)9-24-18(19)8-16-15(20(24)26)10-29-21(27)22(16,28)4-2/h5-8,25,28H,3-4,9-10H2,1-2H3/t22-/m0/s1
InChIKey FJHBVJOVLFPMQE-QFIPXVFZSA-N
SMILES CCC1=C2C=C(O)C=CC2=NC2=C1CN1C2=CC2=C(COC(=O)[C@]2(O)CC)C1=O
Roles Classification
Biological Role(s): apoptosis inducer
Any substance that induces the process of apoptosis (programmed cell death) in multi-celled organisms.
EC 5.99.1.2 (DNA topoisomerase) inhibitor
A topoisomerase inhibitor that inhibits the bacterial enzymes of the DNA topoisomerases, Type I class (EC 5.99.1.2) that catalyze ATP-independent breakage of one of the two strands of DNA, passage of the unbroken strand through the break, and rejoining of the broken strand. These bacterial enzymes reduce the topological stress in the DNA structure by relaxing negatively, but not positively, supercoiled DNA.
drug metabolite

Application(s): antineoplastic agent
A substance that inhibits or prevents the proliferation of neoplasms.
View more via ChEBI Ontology
ChEBI Ontology
Outgoing SN-38 (CHEBI:8988) has role antineoplastic agent (CHEBI:35610)
SN-38 (CHEBI:8988) has role apoptosis inducer (CHEBI:68495)
SN-38 (CHEBI:8988) has role drug metabolite (CHEBI:49103)
SN-38 (CHEBI:8988) has role EC 5.99.1.2 (DNA topoisomerase) inhibitor (CHEBI:50276)
SN-38 (CHEBI:8988) is a δ-lactone (CHEBI:18946)
SN-38 (CHEBI:8988) is a phenols (CHEBI:33853)
SN-38 (CHEBI:8988) is a pyranoindolizinoquinoline (CHEBI:48626)
SN-38 (CHEBI:8988) is a tertiary alcohol (CHEBI:26878)
Incoming irinotecan (CHEBI:80630) has functional parent SN-38 (CHEBI:8988)
SN-38 carboxylic acid (CHEBI:149481) has functional parent SN-38 (CHEBI:8988)
IUPAC Name
(4S)-4,11-diethyl-4,9-dihydroxy-1H-pyrano[3',4':6,7]indolizino[1,2-b]quinoline-3,14(4H,12H)-dione
Synonyms Sources
10-Hydroxy-7-ethylcamptothecin ChemIDplus
7-Ethyl-10-hydroxy-20(S)-camptothecin ChemIDplus
7-Ethyl-10-hydroxycamptothecin ChemIDplus
NK 012 ChemIDplus
NK-012 ChemIDplus
SN 38 ChemIDplus
SN 38 lactone ChemIDplus
SN-38 UniProt
Manual Xrefs Databases
C11173 KEGG COMPOUND
HMDB0060510 HMDB
RS4 PDBeChem
SN-38 Wikipedia
View more database links
Registry Numbers Types Sources
4829984 Reaxys Registry Number Reaxys
86639-52-3 CAS Registry Number KEGG COMPOUND
86639-52-3 CAS Registry Number ChemIDplus
Citations
Polunin Y, Alferiev IS, Brodeur GM, Voronov A, Chorny M (2021)
Environment-Sensitive Polymeric Micelles Encapsulating SN-38 Potently Suppress Growth of Neuroblastoma Cells Exhibiting Intrinsic and Acquired Drug Resistance.
ACS pharmacology & translational science 4, 240-247 [PubMed:33615176]
[show Abstract]
Sharifi F, Jahangiri M, Ebrahimnejad P (2021)
Synthesis of novel polymeric nanoparticles (methoxy-polyethylene glycol-chitosan/hyaluronic acid) containing 7-ethyl-10-hydroxycamptothecin for colon cancer therapy: in vitro, ex vivo and in vivo investigation.
Artificial cells, nanomedicine, and biotechnology 49, 367-380 [PubMed:33851564]
[show Abstract]
Cressey P, Amrahli M, So PW, Gedroyc W, Wright M, Thanou M (2021)
Image-guided thermosensitive liposomes for focused ultrasound enhanced co-delivery of carboplatin and SN-38 against triple negative breast cancer in mice.
Biomaterials 271, 120758 [PubMed:33774525]
[show Abstract]
Wang Y, Huang J, Wu Q, Zhang J, Ma Z, Ma S, Zhang S (2021)
Downregulation of breast cancer resistance protein by long-term fractionated radiotherapy sensitizes lung adenocarcinoma to SN-38.
Investigational new drugs 39, 458-468 [PubMed:33475937]
[show Abstract]
Zhao K, Guo T, Sun X, Xiong T, Ren X, Wu L, Yang R, Sun H, Shi S, Zhang J (2021)
Mechanism and optimization of supramolecular complexation-enhanced fluorescence spectroscopy for the determination of SN-38 in plasma and cells.
Luminescence : the journal of biological and chemical luminescence 36, 531-542 [PubMed:33125824]
[show Abstract]
Liu S, Hu Z, Zhang Q, Zhu Q, Chen Y, Lu W (2020)
Co-Prodrugs of 7-Ethyl-10-hydroxycamptothecin and Vorinostat with in Vitro Hydrolysis and Anticancer Effects.
ACS omega 5, 350-357 [PubMed:31956782]
[show Abstract]
Fontaine SD, Santi AD, Reid R, Smith PC, Ashley GW, Santi DV (2020)
PLX038: a PEGylated prodrug of SN-38 independent of UGT1A1 activity.
Cancer chemotherapy and pharmacology 85, 225-229 [PubMed:31707444]
[show Abstract]
Wu Z, Li S, Cai Y, Chen F, Chen Y, Luo X (2020)
Synergistic action of doxorubicin and 7-Ethyl-10-hydroxycamptothecin polyphosphorylcholine polymer prodrug.
Colloids and surfaces. B, Biointerfaces 189, 110741 [PubMed:32032928]
[show Abstract]
Orlando BJ, Liao M (2020)
ABCG2 transports anticancer drugs via a closed-to-open switch.
Nature communications 11, 2264 [PubMed:32385283]
[show Abstract]
Sadat SMA, Vakili MR, Paiva IM, Weinfeld M, Lavasanifar A (2020)
Development of Self-Associating SN-38-Conjugated Poly(ethylene oxide)-Poly(ester) Micelles for Colorectal Cancer Therapy.
Pharmaceutics 12, E1033 [PubMed:33138058]
[show Abstract]
Sun R, Zhu L, Li L, Song W, Gong X, Qi X, Wang Y, Ghose R, Gao S, Hu M, Liu Z (2020)
Irinotecan-mediated diarrhea is mainly correlated with intestinal exposure to SN-38: Critical role of gut Ugt.
Toxicology and applied pharmacology 398, 115032 [PubMed:32387182]
[show Abstract]
Yang W, Yang Z, Liu J, Liu D, Wang Y (2019)
Development of a method to quantify total and free irinotecan and 7-ethyl-10-hydroxycamptothecin (SN-38) for pharmacokinetic and bio-distribution studies after administration of irinotecan liposomal formulation.
Asian journal of pharmaceutical sciences 14, 687-697 [PubMed:32104495]
[show Abstract]
Fontaine SD, Hann B, Reid R, Ashley GW, Santi DV (2019)
Species-specific optimization of PEG~SN-38 prodrug pharmacokinetics and antitumor effects in a triple-negative BRCA1-deficient xenograft.
Cancer chemotherapy and pharmacology 84, 729-738 [PubMed:31321449]
[show Abstract]
Kodawara T, Higashi T, Negoro Y, Kamitani Y, Igarashi T, Watanabe K, Tsukamoto H, Yano R, Masada M, Iwasaki H, Nakamura T (2016)
The Inhibitory Effect of Ciprofloxacin on the β-Glucuronidase-mediated Deconjugation of the Irinotecan Metabolite SN-38-G.
Basic & clinical pharmacology & toxicology 118, 333-337 [PubMed:26518357]
[show Abstract]
Casadó A, Giuffrida MC, Sagristá ML, Castelli F, Pujol M, Alsina MA, Mora M (2016)
Langmuir monolayers and Differential Scanning Calorimetry for the study of the interactions between camptothecin drugs and biomembrane models.
Biochimica et biophysica acta 1858, 422-433 [PubMed:26656185]
[show Abstract]
Monterrubio C, Pascual-Pasto G, Cano F, Vila-Ubach M, Manzanares A, Schaiquevich P, Tornero JA, Sosnik A, Mora J, Carcaboso AM (2016)
SN-38-loaded nanofiber matrices for local control of pediatric solid tumors after subtotal resection surgery.
Biomaterials 79, 69-78 [PubMed:26695118]
[show Abstract]
Faltas B, Goldenberg DM, Ocean AJ, Govindan SV, Wilhelm F, Sharkey RM, Hajdenberg J, Hodes G, Nanus DM, Tagawa ST (2016)
Sacituzumab Govitecan, a Novel Antibody--Drug Conjugate, in Patients With Metastatic Platinum-Resistant Urothelial Carcinoma.
Clinical genitourinary cancer 14, e75-9 [PubMed:26541586]
[show Abstract]
Koliqi R, Dimchevska S, Geskovski N, Petruševski G, Chacorovska M, Pejova B, Hristov DR, Ugarkovic S, Goracinova K (2016)
PEO-PPO-PEO/Poly(DL-lactide-co-caprolactone) Nanoparticles as Carriers for SN-38: Design, Optimization and Nano-Bio Interface Interactions.
Current drug delivery 13, 339-352 [PubMed:26728136]
[show Abstract]
Zhang R, Saito R, Mano Y, Sumiyoshi A, Kanamori M, Sonoda Y, Kawashima R, Tominaga T (2016)
Convection-enhanced delivery of SN-38-loaded polymeric micelles (NK012) enables consistent distribution of SN-38 and is effective against rodent intracranial brain tumor models.
Drug delivery 23, 2780-2786 [PubMed:26330269]
[show Abstract]
Fujita D, Saito Y, Nakanishi T, Tamai I (2016)
Organic Anion Transporting Polypeptide (OATP)2B1 Contributes to Gastrointestinal Toxicity of Anticancer Drug SN-38, Active Metabolite of Irinotecan Hydrochloride.
Drug metabolism and disposition: the biological fate of chemicals 44, 1-7 [PubMed:26526067]
[show Abstract]
Fujita K, Masuo Y, Okumura H, Watanabe Y, Suzuki H, Sunakawa Y, Shimada K, Kawara K, Akiyama Y, Kitamura M, Kunishima M, Sasaki Y, Kato Y (2016)
Increased Plasma Concentrations of Unbound SN-38, the Active Metabolite of Irinotecan, in Cancer Patients with Severe Renal Failure.
Pharmaceutical research 33, 269-282 [PubMed:26337772]
[show Abstract]
Xu G, Shi C, Guo D, Wang L, Ling Y, Han X, Luo J (2015)
Functional-segregated coumarin-containing telodendrimer nanocarriers for efficient delivery of SN-38 for colon cancer treatment.
Acta biomaterialia 21, 85-98 [PubMed:25910639]
[show Abstract]
Li W, Xing Y, Liu Y (2015)
Inhibition of SN-38 glucuronidation by gefitinib and its metabolite.
Cancer chemotherapy and pharmacology 75, 1253-1260 [PubMed:25917289]
[show Abstract]
Sharkey RM, McBride WJ, Cardillo TM, Govindan SV, Wang Y, Rossi EA, Chang CH, Goldenberg DM (2015)
Enhanced Delivery of SN-38 to Human Tumor Xenografts with an Anti-Trop-2-SN-38 Antibody Conjugate (Sacituzumab Govitecan).
Clinical cancer research : an official journal of the American Association for Cancer Research 21, 5131-5138 [PubMed:26106073]
[show Abstract]
Vejjasilpa K, Nasongkla N, Manaspon C, Larbcharoensub N, Boongird A, Hongeng S, Israsena N (2015)
Antitumor efficacy and intratumoral distribution of SN-38 from polymeric depots in brain tumor model.
Experimental biology and medicine (Maywood, N.J.) 240, 1640-1647 [PubMed:26080460]
[show Abstract]
Essa S, Daoud J, Lafleur M, Martel S, Tabrizian M (2015)
SN-38 active loading in poly(lactic-co-glycolic acid) nanoparticles and assessment of their anticancer properties on COLO-205 human colon adenocarcinoma cells.
Journal of microencapsulation 32, 784-793 [PubMed:26381056]
[show Abstract]
Zhu X, Ni S, Xia T, Yao Q, Li H, Wang B, Wang J, Li X, Su W (2015)
Anti-Neoplastic Cytotoxicity of SN-38-Loaded PCL/Gelatin Electrospun Composite Nanofiber Scaffolds against Human Glioblastoma Cells In Vitro.
Journal of pharmaceutical sciences 104, 4345-4354 [PubMed:26505475]
[show Abstract]
Nakatsuji M, Inoue H, Kohno M, Saito M, Tsuge S, Shimizu S, Ishida A, Ishibashi O, Inui T (2015)
Human Lipocalin-Type Prostaglandin D Synthase-Based Drug Delivery System for Poorly Water-Soluble Anti-Cancer Drug SN-38.
PloS one 10, e0142206 [PubMed:26529243]
[show Abstract]
Vangara KK, Ali HI, Lu D, Liu JL, Kolluru S, Palakurthi S (2014)
SN-38-cyclodextrin complexation and its influence on the solubility, stability, and in vitro anticancer activity against ovarian cancer.
AAPS PharmSciTech 15, 472-482 [PubMed:24477982]
[show Abstract]
Nittayacharn P, Manaspon C, Hongeng S, Nasongkla N (2014)
HPLC analysis and extraction method of SN-38 in brain tumor model after injected by polymeric drug delivery system.
Experimental biology and medicine (Maywood, N.J.) 239, 1619-1629 [PubMed:24990485]
[show Abstract]
Santi DV, Schneider EL, Ashley GW (2014)
Macromolecular prodrug that provides the irinotecan (CPT-11) active-metabolite SN-38 with ultralong half-life, low C(max), and low glucuronide formation.
Journal of medicinal chemistry 57, 2303-2314 [PubMed:24494988]
[show Abstract]
Iusuf D, Ludwig M, Elbatsh A, van Esch A, van de Steeg E, Wagenaar E, van der Valk M, Lin F, van Tellingen O, Schinkel AH (2014)
OATP1A/1B transporters affect irinotecan and SN-38 pharmacokinetics and carboxylesterase expression in knockout and humanized transgenic mice.
Molecular cancer therapeutics 13, 492-503 [PubMed:24194565]
[show Abstract]
Fujita K, Sugiura T, Okumura H, Umeda S, Nakamichi N, Watanabe Y, Suzuki H, Sunakawa Y, Shimada K, Kawara K, Sasaki Y, Kato Y (2014)
Direct inhibition and down-regulation by uremic plasma components of hepatic uptake transporter for SN-38, an active metabolite of irinotecan, in humans.
Pharmaceutical research 31, 204-215 [PubMed:23921491]
[show Abstract]
Yu J, Han JC, Gao YJ (2014)
Biotransformation of glucoaurantio-obtusin towards aurantio-obtusin increases the toxicity of irinotecan through increased inhibition towards SN-38 glucuronidation.
Phytotherapy research : PTR 28, 1577-1580 [PubMed:24842785]
[show Abstract]
Yang FY, Zhang WP, Wang XY, Yang WC, Dang HW (2014)
[Pharmacokinetics of SN-38 in rats and tissue distribution of 7-ethyl-10-hydroxycamptothecin in mice after intravenous injection of irinotecan hydrochloride nanoparticles].
Yao xue xue bao = Acta pharmaceutica Sinica 49, 1029-1033 [PubMed:25233635]
[show Abstract]
Last Modified
25 May 2021