Name: rs1672717
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1672717

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr11:113942011 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: G>A / G>C / G>T
Variation Type: SNV Single Nucleotide Variation
Frequency: G=0.373742 (112743/301660, ALFA)
G=0.271748 (71929/264690, TOPMED)
G=0.284842 (39903/140088, GnomAD) (+ 21 more)
G=0.26506 (7490/28258, 14KJPN)
G=0.26596 (4457/16758, 8.3KJPN)
G=0.2484 (1591/6404, 1000G_30x)
G=0.2574 (1289/5008, 1000G)
G=0.4143 (1856/4480, Estonian)
G=0.3985 (1536/3854, ALSPAC)
G=0.4304 (1596/3708, TWINSUK)
G=0.3635 (1065/2930, KOREAN)
G=0.2526 (526/2082, HGDP_Stanford)
G=0.2175 (411/1890, HapMap)
G=0.3253 (596/1832, Korea1K)
G=0.2820 (317/1124, Daghestan)
G=0.385 (384/998, GoNL)
G=0.382 (302/790, PRJEB37584)
A=0.480 (288/600, NorthernSweden)
G=0.220 (112/510, SGDP_PRJ)
G=0.176 (38/216, Qatari)
G=0.324 (70/216, Vietnamese)
G=0.41 (22/54, Ancient Sardinia)
G=0.31 (16/52, Siberian)
G=0.47 (19/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: HTR3B : Intron Variant
Publications: 8 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	306696	G=0.372724	A=0.627276
European	Sub	270484	G=0.392530	A=0.607470
African	Sub	11422	G=0.08282	A=0.91718
African Others	Sub	456	G=0.022	A=0.978
African American	Sub	10966	G=0.08535	A=0.91465
Asian	Sub	3906	G=0.3139	A=0.6861
East Asian	Sub	3166	G=0.3414	A=0.6586
Other Asian	Sub	740	G=0.196	A=0.804
Latin American 1	Sub	1118	G=0.2674	A=0.7326
Latin American 2	Sub	7146	G=0.2645	A=0.7355
South Asian	Sub	5210	G=0.3182	A=0.6818
Other	Sub	7410	G=0.2862	A=0.7138

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	301660	G=0.373742	A=0.626258
Allele Frequency Aggregator	European	Sub	267390	G=0.392408	A=0.607592
Allele Frequency Aggregator	African	Sub	10280	G=0.08337	A=0.91663
Allele Frequency Aggregator	Latin American 2	Sub	7146	G=0.2645	A=0.7355
Allele Frequency Aggregator	Other	Sub	6610	G=0.2855	A=0.7145
Allele Frequency Aggregator	South Asian	Sub	5210	G=0.3182	A=0.6818
Allele Frequency Aggregator	Asian	Sub	3906	G=0.3139	A=0.6861
Allele Frequency Aggregator	Latin American 1	Sub	1118	G=0.2674	A=0.7326
TopMed	Global	Study-wide	264690	G=0.271748	A=0.728252
gnomAD - Genomes	Global	Study-wide	140088	G=0.284842	A=0.715158
gnomAD - Genomes	European	Sub	75858	G=0.39695	A=0.60305
gnomAD - Genomes	African	Sub	42016	G=0.08528	A=0.91472
gnomAD - Genomes	American	Sub	13626	G=0.25716	A=0.74284
gnomAD - Genomes	Ashkenazi Jewish	Sub	3318	G=0.3270	A=0.6730
gnomAD - Genomes	East Asian	Sub	3118	G=0.3335	A=0.6665
gnomAD - Genomes	Other	Sub	2152	G=0.2691	A=0.7309
14KJPN	JAPANESE	Study-wide	28258	G=0.26506	A=0.73494
8.3KJPN	JAPANESE	Study-wide	16758	G=0.26596	A=0.73404
1000Genomes_30x	Global	Study-wide	6404	G=0.2484	A=0.7516
1000Genomes_30x	African	Sub	1786	G=0.0286	A=0.9714
1000Genomes_30x	Europe	Sub	1266	G=0.4107	A=0.5893
1000Genomes_30x	South Asian	Sub	1202	G=0.3569	A=0.6431
1000Genomes_30x	East Asian	Sub	1170	G=0.3009	A=0.6991
1000Genomes_30x	American	Sub	980	G=0.244	A=0.756
1000Genomes	Global	Study-wide	5008	G=0.2574	A=0.7426
1000Genomes	African	Sub	1322	G=0.0287	A=0.9713
1000Genomes	East Asian	Sub	1008	G=0.3065	A=0.6935
1000Genomes	Europe	Sub	1006	G=0.4175	A=0.5825
1000Genomes	South Asian	Sub	978	G=0.352	A=0.648
1000Genomes	American	Sub	694	G=0.256	A=0.744
Genetic variation in the Estonian population	Estonian	Study-wide	4480	G=0.4143	A=0.5857
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.3985	A=0.6015
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.4304	A=0.5696
KOREAN population from KRGDB	KOREAN	Study-wide	2930	G=0.3635	A=0.6365, C=0.0000, T=0.0000
HGDP-CEPH-db Supplement 1	Global	Study-wide	2082	G=0.2526	A=0.7474
HGDP-CEPH-db Supplement 1	Est_Asia	Sub	468	G=0.357	A=0.643
HGDP-CEPH-db Supplement 1	Central_South_Asia	Sub	414	G=0.232	A=0.768
HGDP-CEPH-db Supplement 1	Middle_Est	Sub	350	G=0.240	A=0.760
HGDP-CEPH-db Supplement 1	Europe	Sub	320	G=0.356	A=0.644
HGDP-CEPH-db Supplement 1	Africa	Sub	242	G=0.017	A=0.983
HGDP-CEPH-db Supplement 1	America	Sub	216	G=0.236	A=0.764
HGDP-CEPH-db Supplement 1	Oceania	Sub	72	G=0.14	A=0.86
HapMap	Global	Study-wide	1890	G=0.2175	A=0.7825
HapMap	American	Sub	770	G=0.316	A=0.684
HapMap	African	Sub	692	G=0.036	A=0.964
HapMap	Asian	Sub	254	G=0.295	A=0.705
HapMap	Europe	Sub	174	G=0.391	A=0.609
Korean Genome Project	KOREAN	Study-wide	1832	G=0.3253	A=0.6747
Genome-wide autozygosity in Daghestan	Global	Study-wide	1124	G=0.2820	A=0.7180
Genome-wide autozygosity in Daghestan	Daghestan	Sub	620	G=0.256	A=0.744
Genome-wide autozygosity in Daghestan	Near_East	Sub	142	G=0.268	A=0.732
Genome-wide autozygosity in Daghestan	Central Asia	Sub	122	G=0.270	A=0.730
Genome-wide autozygosity in Daghestan	Europe	Sub	108	G=0.417	A=0.583
Genome-wide autozygosity in Daghestan	South Asian	Sub	96	G=0.33	A=0.67
Genome-wide autozygosity in Daghestan	Caucasus	Sub	36	G=0.28	A=0.72
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	G=0.385	A=0.615
CNV burdens in cranial meningiomas	Global	Study-wide	790	G=0.382	A=0.618
CNV burdens in cranial meningiomas	CRM	Sub	790	G=0.382	A=0.618
Northern Sweden	ACPOP	Study-wide	600	G=0.520	A=0.480
SGDP_PRJ	Global	Study-wide	510	G=0.220	A=0.780
Qatari	Global	Study-wide	216	G=0.176	A=0.824
A Vietnamese Genetic Variation Database	Global	Study-wide	216	G=0.324	A=0.676
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	54	G=0.41	A=0.59
Siberian	Global	Study-wide	52	G=0.31	A=0.69
The Danish reference pan genome	Danish	Study-wide	40	G=0.47	A=0.53

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 11	NC_000011.10:g.113942011G>A
GRCh38.p14 chr 11	NC_000011.10:g.113942011G>C
GRCh38.p14 chr 11	NC_000011.10:g.113942011G>T
GRCh37.p13 chr 11	NC_000011.9:g.113812733G>A
GRCh37.p13 chr 11	NC_000011.9:g.113812733G>C
GRCh37.p13 chr 11	NC_000011.9:g.113812733G>T
HTR3B RefSeqGene	NG_011483.1:g.42145G>A
HTR3B RefSeqGene	NG_011483.1:g.42145G>C
HTR3B RefSeqGene	NG_011483.1:g.42145G>T

Gene: HTR3B, 5-hydroxytryptamine receptor 3B (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
HTR3B transcript variant 2	NM_001363563.2:c.664-971G… NM_001363563.2:c.664-971G>A	N/A	Intron Variant
HTR3B transcript variant 1	NM_006028.5:c.697-971G>A	N/A	Intron Variant
HTR3B transcript variant X1	XM_017018552.3:c.490-971G… XM_017018552.3:c.490-971G>A	N/A	Intron Variant
HTR3B transcript variant X2	XM_024448767.2:c.403-971G… XM_024448767.2:c.403-971G>A	N/A	Intron Variant
HTR3B transcript variant X3	XM_047427869.1:c.664-2562… XM_047427869.1:c.664-2562G>A	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	G=	A	C	T
GRCh38.p14 chr 11	NC_000011.10:g.113942011=	NC_000011.10:g.113942011G>A	NC_000011.10:g.113942011G>C	NC_000011.10:g.113942011G>T
GRCh37.p13 chr 11	NC_000011.9:g.113812733=	NC_000011.9:g.113812733G>A	NC_000011.9:g.113812733G>C	NC_000011.9:g.113812733G>T
HTR3B RefSeqGene	NG_011483.1:g.42145=	NG_011483.1:g.42145G>A	NG_011483.1:g.42145G>C	NG_011483.1:g.42145G>T
HTR3B transcript variant 2	NM_001363563.2:c.664-971=	NM_001363563.2:c.664-971G>A	NM_001363563.2:c.664-971G>C	NM_001363563.2:c.664-971G>T
HTR3B transcript variant 1	NM_006028.4:c.697-971=	NM_006028.4:c.697-971G>A	NM_006028.4:c.697-971G>C	NM_006028.4:c.697-971G>T
HTR3B transcript variant 1	NM_006028.5:c.697-971=	NM_006028.5:c.697-971G>A	NM_006028.5:c.697-971G>C	NM_006028.5:c.697-971G>T
HTR3B transcript variant X1	XM_017018552.3:c.490-971=	XM_017018552.3:c.490-971G>A	XM_017018552.3:c.490-971G>C	XM_017018552.3:c.490-971G>T
HTR3B transcript variant X2	XM_024448767.2:c.403-971=	XM_024448767.2:c.403-971G>A	XM_024448767.2:c.403-971G>C	XM_024448767.2:c.403-971G>T
HTR3B transcript variant X3	XM_047427869.1:c.664-2562=	XM_047427869.1:c.664-2562G>A	XM_047427869.1:c.664-2562G>C	XM_047427869.1:c.664-2562G>T

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

143 SubSNP, 24 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	SC_JCM	ss2499786	Nov 09, 2000 (89)
2	BCM_SSAHASNP	ss10695370	Jul 11, 2003 (116)
3	CSHL-HAPMAP	ss16540736	Feb 27, 2004 (120)
4	PERLEGEN	ss24103436	Sep 20, 2004 (123)
5	ABI	ss40081118	Mar 13, 2006 (126)
6	ILLUMINA	ss66608774	Nov 29, 2006 (127)
7	ILLUMINA	ss67145960	Nov 29, 2006 (127)
8	ILLUMINA	ss67487751	Nov 29, 2006 (127)
9	ILLUMINA	ss70447802	May 16, 2007 (127)
10	ILLUMINA	ss70638950	May 23, 2008 (130)
11	ILLUMINA	ss71190016	May 16, 2007 (127)
12	ILLUMINA	ss75480474	Dec 07, 2007 (129)
13	HGSV	ss80713454	Dec 14, 2007 (130)
14	HGSV	ss83569591	Dec 14, 2007 (130)
15	KRIBB_YJKIM	ss83859790	Dec 14, 2007 (130)
16	HGSV	ss84400931	Dec 14, 2007 (130)
17	HGSV	ss85634163	Dec 14, 2007 (130)
18	BCMHGSC_JDW	ss88803670	Mar 24, 2008 (129)
19	HUMANGENOME_JCVI	ss97512730	Feb 03, 2009 (130)
20	1000GENOMES	ss111106123	Jan 25, 2009 (130)
21	1000GENOMES	ss115201382	Jan 25, 2009 (130)
22	ILLUMINA-UK	ss119961493	Dec 01, 2009 (131)
23	ILLUMINA	ss121773609	Dec 01, 2009 (131)
24	ENSEMBL	ss131954346	Dec 01, 2009 (131)
25	ENSEMBL	ss132841293	Dec 01, 2009 (131)
26	ILLUMINA	ss153548644	Dec 01, 2009 (131)
27	GMI	ss156813532	Dec 01, 2009 (131)
28	ILLUMINA	ss159291621	Dec 01, 2009 (131)
29	ILLUMINA	ss160382348	Dec 01, 2009 (131)
30	ILLUMINA	ss170706538	Jul 04, 2010 (132)
31	COMPLETE_GENOMICS	ss170918560	Jul 04, 2010 (132)
32	ILLUMINA	ss172614324	Jul 04, 2010 (132)
33	BUSHMAN	ss203232080	Jul 04, 2010 (132)
34	1000GENOMES	ss225471354	Jul 14, 2010 (132)
35	1000GENOMES	ss235726252	Jul 15, 2010 (132)
36	1000GENOMES	ss242322858	Jul 15, 2010 (132)
37	GMI	ss281177702	May 04, 2012 (137)
38	GMI	ss286460872	Apr 25, 2013 (138)
39	PJP	ss291143451	May 09, 2011 (134)
40	ILLUMINA	ss480063279	May 04, 2012 (137)
41	ILLUMINA	ss480072027	May 04, 2012 (137)
42	ILLUMINA	ss480746622	Sep 08, 2015 (146)
43	ILLUMINA	ss484829536	May 04, 2012 (137)
44	ILLUMINA	ss536905316	Sep 08, 2015 (146)
45	TISHKOFF	ss562837387	Apr 25, 2013 (138)
46	SSMP	ss658360954	Apr 25, 2013 (138)
47	ILLUMINA	ss779034378	Sep 08, 2015 (146)
48	ILLUMINA	ss782861342	Aug 21, 2014 (142)
49	ILLUMINA	ss783825661	Sep 08, 2015 (146)
50	ILLUMINA	ss825416535	Apr 01, 2015 (144)
51	ILLUMINA	ss832115370	Apr 01, 2015 (144)
52	ILLUMINA	ss832803729	Aug 21, 2014 (142)
53	ILLUMINA	ss833394559	Aug 21, 2014 (142)
54	ILLUMINA	ss834497139	Sep 08, 2015 (146)
55	EVA-GONL	ss988982106	Aug 21, 2014 (142)
56	JMKIDD_LAB	ss1078059207	Aug 21, 2014 (142)
57	1000GENOMES	ss1343039177	Aug 21, 2014 (142)
58	HAMMER_LAB	ss1397617682	Sep 08, 2015 (146)
59	DDI	ss1426766598	Apr 01, 2015 (144)
60	EVA_GENOME_DK	ss1575963623	Apr 01, 2015 (144)
61	EVA_DECODE	ss1598648296	Apr 01, 2015 (144)
62	EVA_UK10K_ALSPAC	ss1627502306	Apr 01, 2015 (144)
63	EVA_UK10K_TWINSUK	ss1670496339	Apr 01, 2015 (144)
64	EVA_SVP	ss1713286156	Apr 01, 2015 (144)
65	ILLUMINA	ss1751995398	Sep 08, 2015 (146)
66	HAMMER_LAB	ss1807004932	Sep 08, 2015 (146)
67	WEILL_CORNELL_DGM	ss1932343220	Feb 12, 2016 (147)
68	ILLUMINA	ss1946323190	Feb 12, 2016 (147)
69	ILLUMINA	ss1959386937	Feb 12, 2016 (147)
70	GENOMED	ss1967463381	Jul 19, 2016 (147)
71	JJLAB	ss2026915540	Sep 14, 2016 (149)
72	USC_VALOUEV	ss2155228235	Dec 20, 2016 (150)
73	HUMAN_LONGEVITY	ss2185859959	Dec 20, 2016 (150)
74	SYSTEMSBIOZJU	ss2627932447	Nov 08, 2017 (151)
75	ILLUMINA	ss2632889499	Nov 08, 2017 (151)
76	GRF	ss2699538351	Nov 08, 2017 (151)
77	ILLUMINA	ss2710746574	Nov 08, 2017 (151)
78	GNOMAD	ss2904665435	Nov 08, 2017 (151)
79	AFFY	ss2985599396	Nov 08, 2017 (151)
80	SWEGEN	ss3008809503	Nov 08, 2017 (151)
81	ILLUMINA	ss3021377671	Nov 08, 2017 (151)
82	BIOINF_KMB_FNS_UNIBA	ss3027258513	Nov 08, 2017 (151)
83	CSHL	ss3349803366	Nov 08, 2017 (151)
84	ILLUMINA	ss3625609864	Oct 12, 2018 (152)
85	ILLUMINA	ss3626753947	Oct 12, 2018 (152)
86	ILLUMINA	ss3630903347	Oct 12, 2018 (152)
87	ILLUMINA	ss3632999992	Oct 12, 2018 (152)
88	ILLUMINA	ss3633699969	Oct 12, 2018 (152)
89	ILLUMINA	ss3634476192	Oct 12, 2018 (152)
90	ILLUMINA	ss3635391240	Oct 12, 2018 (152)
91	ILLUMINA	ss3636160449	Oct 12, 2018 (152)
92	ILLUMINA	ss3637142143	Oct 12, 2018 (152)
93	ILLUMINA	ss3637931403	Oct 12, 2018 (152)
94	ILLUMINA	ss3638979400	Oct 12, 2018 (152)
95	ILLUMINA	ss3639490957	Oct 12, 2018 (152)
96	ILLUMINA	ss3640183528	Oct 12, 2018 (152)
97	ILLUMINA	ss3641021075	Oct 12, 2018 (152)
98	ILLUMINA	ss3641315613	Oct 12, 2018 (152)
99	ILLUMINA	ss3642927810	Oct 12, 2018 (152)
100	ILLUMINA	ss3644576054	Oct 12, 2018 (152)
101	URBANLAB	ss3649708971	Oct 12, 2018 (152)
102	ILLUMINA	ss3651745253	Oct 12, 2018 (152)
103	EGCUT_WGS	ss3676137320	Jul 13, 2019 (153)
104	EVA_DECODE	ss3692634665	Jul 13, 2019 (153)
105	ILLUMINA	ss3725277856	Jul 13, 2019 (153)
106	ACPOP	ss3738555786	Jul 13, 2019 (153)
107	ILLUMINA	ss3744090959	Jul 13, 2019 (153)
108	ILLUMINA	ss3744776968	Jul 13, 2019 (153)
109	EVA	ss3749834724	Jul 13, 2019 (153)
110	ILLUMINA	ss3772276730	Jul 13, 2019 (153)
111	PACBIO	ss3787072507	Jul 13, 2019 (153)
112	PACBIO	ss3792195910	Jul 13, 2019 (153)
113	PACBIO	ss3797078429	Jul 13, 2019 (153)
114	KHV_HUMAN_GENOMES	ss3815164578	Jul 13, 2019 (153)
115	EVA	ss3832848119	Apr 26, 2020 (154)
116	EVA	ss3839986505	Apr 26, 2020 (154)
117	EVA	ss3845468226	Apr 26, 2020 (154)
118	HGDP	ss3847431966	Apr 26, 2020 (154)
119	SGDP_PRJ	ss3877174724	Apr 26, 2020 (154)
120	KRGDB	ss3925633670	Apr 26, 2020 (154)
121	KOGIC	ss3970783709	Apr 26, 2020 (154)
122	EVA	ss3984657592	Apr 26, 2021 (155)
123	EVA	ss3985558128	Apr 26, 2021 (155)
124	EVA	ss4017559954	Apr 26, 2021 (155)
125	TOPMED	ss4900624481	Apr 26, 2021 (155)
126	TOMMO_GENOMICS	ss5203971152	Apr 26, 2021 (155)
127	1000G_HIGH_COVERAGE	ss5288965734	Oct 16, 2022 (156)
128	EVA	ss5315577981	Oct 16, 2022 (156)
129	EVA	ss5402361248	Oct 16, 2022 (156)
130	HUGCELL_USP	ss5483948604	Oct 16, 2022 (156)
131	EVA	ss5510528700	Oct 16, 2022 (156)
132	1000G_HIGH_COVERAGE	ss5585483877	Oct 16, 2022 (156)
133	SANFORD_IMAGENETICS	ss5624286020	Oct 16, 2022 (156)
134	SANFORD_IMAGENETICS	ss5652108383	Oct 16, 2022 (156)
135	TOMMO_GENOMICS	ss5752442610	Oct 16, 2022 (156)
136	EVA	ss5799854835	Oct 16, 2022 (156)
137	YY_MCH	ss5812791978	Oct 16, 2022 (156)
138	EVA	ss5837254571	Oct 16, 2022 (156)
139	EVA	ss5847398119	Oct 16, 2022 (156)
140	EVA	ss5850158465	Oct 16, 2022 (156)
141	EVA	ss5921731662	Oct 16, 2022 (156)
142	EVA	ss5943439587	Oct 16, 2022 (156)
143	EVA	ss5979372331	Oct 16, 2022 (156)
144	1000Genomes	NC_000011.9 - 113812733	Oct 12, 2018 (152)
145	1000Genomes_30x	NC_000011.10 - 113942011	Oct 16, 2022 (156)
146	The Avon Longitudinal Study of Parents and Children	NC_000011.9 - 113812733	Oct 12, 2018 (152)
147	Genome-wide autozygosity in Daghestan	NC_000011.8 - 113317943	Apr 26, 2020 (154)
148	Genetic variation in the Estonian population	NC_000011.9 - 113812733	Oct 12, 2018 (152)
149	The Danish reference pan genome	NC_000011.9 - 113812733	Apr 26, 2020 (154)
150	gnomAD - Genomes	NC_000011.10 - 113942011	Apr 26, 2021 (155)
151	Genome of the Netherlands Release 5	NC_000011.9 - 113812733	Apr 26, 2020 (154)
152	HGDP-CEPH-db Supplement 1	NC_000011.8 - 113317943	Apr 26, 2020 (154)
153	HapMap	NC_000011.10 - 113942011	Apr 26, 2020 (154)
154	KOREAN population from KRGDB	NC_000011.9 - 113812733	Apr 26, 2020 (154)
155	Korean Genome Project	NC_000011.10 - 113942011	Apr 26, 2020 (154)
156	Northern Sweden	NC_000011.9 - 113812733	Jul 13, 2019 (153)
157	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000011.9 - 113812733	Apr 26, 2021 (155)
158	CNV burdens in cranial meningiomas	NC_000011.9 - 113812733	Apr 26, 2021 (155)
159	Qatari	NC_000011.9 - 113812733	Apr 26, 2020 (154)
160	SGDP_PRJ	NC_000011.9 - 113812733	Apr 26, 2020 (154)
161	Siberian	NC_000011.9 - 113812733	Apr 26, 2020 (154)
162	8.3KJPN	NC_000011.9 - 113812733	Apr 26, 2021 (155)
163	14KJPN	NC_000011.10 - 113942011	Oct 16, 2022 (156)
164	TopMed	NC_000011.10 - 113942011	Apr 26, 2021 (155)
165	UK 10K study - Twins	NC_000011.9 - 113812733	Oct 12, 2018 (152)
166	A Vietnamese Genetic Variation Database	NC_000011.9 - 113812733	Jul 13, 2019 (153)
167	ALFA	NC_000011.10 - 113942011	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs56723625	May 23, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
88770, 109858, ss80713454, ss83569591, ss84400931, ss85634163, ss88803670, ss111106123, ss115201382, ss119961493, ss170918560, ss203232080, ss281177702, ss286460872, ss291143451, ss480063279, ss825416535, ss1397617682, ss1598648296, ss1713286156, ss3638979400, ss3639490957, ss3642927810, ss3847431966	NC_000011.8:113317942:G:A	NC_000011.10:113942010:G:A	(self)
55624077, 30875569, 21875568, 2742895, 13778614, 32811064, 11840651, 784055, 207078, 14385150, 29191704, 7744589, 61940459, 30875569, 6852481, ss225471354, ss235726252, ss242322858, ss480072027, ss480746622, ss484829536, ss536905316, ss562837387, ss658360954, ss779034378, ss782861342, ss783825661, ss832115370, ss832803729, ss833394559, ss834497139, ss988982106, ss1078059207, ss1343039177, ss1426766598, ss1575963623, ss1627502306, ss1670496339, ss1751995398, ss1807004932, ss1932343220, ss1946323190, ss1959386937, ss1967463381, ss2026915540, ss2155228235, ss2627932447, ss2632889499, ss2699538351, ss2710746574, ss2904665435, ss2985599396, ss3008809503, ss3021377671, ss3349803366, ss3625609864, ss3626753947, ss3630903347, ss3632999992, ss3633699969, ss3634476192, ss3635391240, ss3636160449, ss3637142143, ss3637931403, ss3640183528, ss3641021075, ss3641315613, ss3644576054, ss3651745253, ss3676137320, ss3738555786, ss3744090959, ss3744776968, ss3749834724, ss3772276730, ss3787072507, ss3792195910, ss3797078429, ss3832848119, ss3839986505, ss3877174724, ss3925633670, ss3984657592, ss3985558128, ss4017559954, ss5203971152, ss5315577981, ss5402361248, ss5510528700, ss5624286020, ss5652108383, ss5799854835, ss5837254571, ss5847398119, ss5943439587, ss5979372331	NC_000011.9:113812732:G:A	NC_000011.10:113942010:G:A	(self)
73009812, 392498323, 703142, 27161710, 86279714, 116170137, 11731846731, ss2185859959, ss3027258513, ss3649708971, ss3692634665, ss3725277856, ss3815164578, ss3845468226, ss3970783709, ss4900624481, ss5288965734, ss5483948604, ss5585483877, ss5752442610, ss5812791978, ss5850158465, ss5921731662	NC_000011.10:113942010:G:A	NC_000011.10:113942010:G:A	(self)
ss10695370	NT_033899.5:17356411:G:A	NC_000011.10:113942010:G:A	(self)
ss16540736	NT_033899.6:17356519:G:A	NC_000011.10:113942010:G:A	(self)
ss2499786, ss24103436, ss40081118, ss66608774, ss67145960, ss67487751, ss70447802, ss70638950, ss71190016, ss75480474, ss83859790, ss97512730, ss121773609, ss131954346, ss132841293, ss153548644, ss156813532, ss159291621, ss160382348, ss170706538, ss172614324	NT_033899.8:17375148:G:A	NC_000011.10:113942010:G:A	(self)
32811064, ss3925633670	NC_000011.9:113812732:G:C	NC_000011.10:113942010:G:C	(self)
32811064, ss3925633670	NC_000011.9:113812732:G:T	NC_000011.10:113942010:G:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

8 citations for rs1672717

PMID	Title	Author	Year	Journal
18937842	The influence of serotonin- and other genes on impulsive behavioral aggression and cognitive impulsivity in children with attention-deficit/hyperactivity disorder (ADHD): Findings from a family-based association test (FBAT) analysis.	Oades RD et al.	2008	Behavioral and brain functions
21570824	Clinical and genetic factors associated with nausea and vomiting in cancer patients receiving opioids.	Laugsand EA et al.	2011	European journal of cancer (Oxford, England
23766564	Pharmacogenetics of chronic pain and its treatment.	Světlík S et al.	2013	Mediators of inflammation
25948405	Can variability in the effect of opioids on refractory breathlessness be explained by genetic factors?	Currow DC et al.	2015	BMJ open
26516523	Pharmacogenetics of analgesic drugs.	Cregg R et al.	2013	British journal of pain
27247849	Genetic variation and cognitive dysfunction in opioid-treated patients with cancer.	Kurita GP et al.	2016	Brain and behavior
30405098	Association and cis-mQTL analysis of variants in serotonergic genes associated with nicotine dependence in Chinese Han smokers.	Han H et al.	2018	Translational psychiatry
33605481	Polymorphisms of 5-hydroxytryptamine receptor type 3B gene and clinical characteristics for vomiting after breast surgery in chinese han female population.	Yan T et al.	2021	Journal of clinical pharmacy and therapeutics

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs1672717