Name: rs9341278
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs9341278

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chrY:13357844 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: G>A
Variation Type: SNV Single Nucleotide Variation
Frequency: A=0.01519 (1251/82362, ALFA)
A=0.07274 (4038/55510, GnomAD_exome)
A=0.09274 (2756/29718, GnomAD) (+ 10 more)
A=0.10825 (1411/13035, ExAC)
A=0.0045 (11/2443, GO-ESP)
A=0.0200 (32/1599, 1000G_30x)
A=0.0486 (68/1400, KOREAN)
A=0.0260 (32/1233, 1000G)
A=0.045 (40/896, chrY)
A=0.022 (18/816, Daghestan)
A=0.00 (0/36, Ancient Sardinia)
G=0.00 (0/20, Siberian)
G=0.00 (0/18, SGDP_PRJ)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: UTY : Intron Variant
Publications: 2 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	82362	G=0.98481	A=0.01519
European	Sub	73420	G=0.98440	A=0.01560
African	Sub	1530	G=1.0000	A=0.0000
African Others	Sub	52	G=1.00	A=0.00
African American	Sub	1478	G=1.0000	A=0.0000
Asian	Sub	1902	G=0.9664	A=0.0336
East Asian	Sub	1548	G=0.9587	A=0.0413
Other Asian	Sub	354	G=1.000	A=0.000
Latin American 1	Sub	180	G=0.989	A=0.011
Latin American 2	Sub	340	G=1.000	A=0.000
South Asian	Sub	136	G=0.985	A=0.015
Other	Sub	4854	G=0.9922	A=0.0078

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	82362	G=0.98481	A=0.01519
Allele Frequency Aggregator	European	Sub	73420	G=0.98440	A=0.01560
Allele Frequency Aggregator	Other	Sub	4854	G=0.9922	A=0.0078
Allele Frequency Aggregator	Asian	Sub	1902	G=0.9664	A=0.0336
Allele Frequency Aggregator	African	Sub	1530	G=1.0000	A=0.0000
Allele Frequency Aggregator	Latin American 2	Sub	340	G=1.000	A=0.000
Allele Frequency Aggregator	Latin American 1	Sub	180	G=0.989	A=0.011
Allele Frequency Aggregator	South Asian	Sub	136	G=0.985	A=0.015
gnomAD - Exomes	Global	Study-wide	55510	G=0.92726	A=0.07274
gnomAD - Exomes	European	Sub	29599	G=0.87182	A=0.12818
gnomAD - Exomes	Asian	Sub	13393	G=0.98820	A=0.01180
gnomAD - Exomes	American	Sub	6150	G=0.9984	A=0.0016
gnomAD - Exomes	African	Sub	2570	G=0.9992	A=0.0008
gnomAD - Exomes	Ashkenazi Jewish	Sub	2442	G=1.0000	A=0.0000
gnomAD - Exomes	Other	Sub	1356	G=0.9454	A=0.0546
gnomAD - Genomes	Global	Study-wide	29718	G=0.90726	A=0.09274
gnomAD - Genomes	European	Sub	15957	G=0.83117	A=0.16883
gnomAD - Genomes	African	Sub	8507	G=0.9993	A=0.0007
gnomAD - Genomes	American	Sub	3278	G=0.9994	A=0.0006
gnomAD - Genomes	East Asian	Sub	770	G=0.949	A=0.051
gnomAD - Genomes	Ashkenazi Jewish	Sub	742	G=1.000	A=0.000
gnomAD - Genomes	Other	Sub	464	G=0.968	A=0.032
ExAC	Global	Study-wide	13035	G=0.89175	A=0.10825
ExAC	Europe	Sub	7446	G=0.8219	A=0.1781
ExAC	Asian	Sub	4100	G=0.9876	A=0.0124
ExAC	African	Sub	883	G=1.000	A=0.000
ExAC	American	Sub	473	G=0.996	A=0.004
ExAC	Other	Sub	133	G=0.759	A=0.241
GO Exome Sequencing Project	Global	Study-wide	2443	G=0.9955	A=0.0045
GO Exome Sequencing Project	European American	Sub	1872	G=0.9941	A=0.0059
GO Exome Sequencing Project	African American	Sub	571	G=1.000	A=0.000
1000Genomes_30x	Global	Study-wide	1599	G=0.9800	A=0.0200
1000Genomes_30x	African	Sub	458	G=1.000	A=0.000
1000Genomes_30x	South Asian	Sub	319	G=0.997	A=0.003
1000Genomes_30x	Europe	Sub	305	G=0.925	A=0.075
1000Genomes_30x	East Asian	Sub	292	G=0.973	A=0.027
1000Genomes_30x	American	Sub	225	G=1.000	A=0.000
KOREAN population from KRGDB	KOREAN	Study-wide	1400	G=0.9514	A=0.0486
1000Genomes	Global	Study-wide	1233	G=0.9740	A=0.0260
1000Genomes	African	Sub	319	G=1.000	A=0.000
1000Genomes	South Asian	Sub	260	G=0.996	A=0.004
1000Genomes	East Asian	Sub	244	G=0.967	A=0.033
1000Genomes	Europe	Sub	240	G=0.904	A=0.096
1000Genomes	American	Sub	170	G=1.000	A=0.000
chrY_custom_capture	Global	Study-wide	896	G=0.955	A=0.045
chrY_custom_capture	AFP	Sub	0	G=0	A=0
chrY_custom_capture	AHG	Sub	0	G=0	A=0
chrY_custom_capture	ASC	Sub	0	G=0	A=0
chrY_custom_capture	ASE	Sub	0	G=0	A=0
chrY_custom_capture	AUS	Sub	0	G=0	A=0
chrY_custom_capture	BRI	Sub	0	G=0	A=0
chrY_custom_capture	ENV	Sub	0	G=0	A=0
chrY_custom_capture	ESC	Sub	0	G=0	A=0
chrY_custom_capture	ESE	Sub	0	G=0	A=0
chrY_custom_capture	ESW	Sub	0	G=0	A=0
chrY_custom_capture	MEX	Sub	0	G=0	A=0
chrY_custom_capture	MNE	Sub	0	G=0	A=0
chrY_custom_capture	SCA	Sub	0	G=0	A=0
Genome-wide autozygosity in Daghestan	Global	Study-wide	816	G=0.978	A=0.022
Genome-wide autozygosity in Daghestan	Daghestan	Sub	308	G=0.994	A=0.006
Genome-wide autozygosity in Daghestan	Near_East	Sub	144	G=0.944	A=0.056
Genome-wide autozygosity in Daghestan	Central Asia	Sub	122	G=0.934	A=0.066
Genome-wide autozygosity in Daghestan	Europe	Sub	108	G=1.000	A=0.000
Genome-wide autozygosity in Daghestan	South Asian	Sub	98	G=1.00	A=0.00
Genome-wide autozygosity in Daghestan	Caucasus	Sub	36	G=1.00	A=0.00
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	36	G=1.00	A=0.00
Siberian	Global	Study-wide	20	G=0.00	A=1.00
SGDP_PRJ	Global	Study-wide	18	G=0.00	A=1.00

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr Y	NC_000024.10:g.13357844G>A
GRCh37.p13 chr Y	NC_000024.9:g.15469724G>A

Gene: UTY, ubiquitously transcribed tetratricopeptide repeat containing, Y-linked (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
UTY transcript variant 4	NM_001258249.2:c.1569+33C… NM_001258249.2:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant 5	NM_001258250.1:c.1230+33C… NM_001258250.1:c.1230+33C>T	N/A	Intron Variant
UTY transcript variant 6	NM_001258251.1:c.1278+33C… NM_001258251.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 7	NM_001258252.1:c.1413+33C… NM_001258252.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant 8	NM_001258253.1:c.1278+33C… NM_001258253.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 9	NM_001258254.1:c.1413+33C… NM_001258254.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant 10	NM_001258255.1:c.1413+33C… NM_001258255.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant 11	NM_001258256.1:c.1413+33C… NM_001258256.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant 12	NM_001258257.1:c.1278+33C… NM_001258257.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 13	NM_001258258.1:c.1434+33C… NM_001258258.1:c.1434+33C>T	N/A	Intron Variant
UTY transcript variant 14	NM_001258259.1:c.1230+33C… NM_001258259.1:c.1230+33C>T	N/A	Intron Variant
UTY transcript variant 15	NM_001258260.1:c.1368+33C… NM_001258260.1:c.1368+33C>T	N/A	Intron Variant
UTY transcript variant 16	NM_001258261.1:c.1404+33C… NM_001258261.1:c.1404+33C>T	N/A	Intron Variant
UTY transcript variant 17	NM_001258262.1:c.1569+33C… NM_001258262.1:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant 18	NM_001258263.1:c.1278+33C… NM_001258263.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 19	NM_001258264.1:c.1365+33C… NM_001258264.1:c.1365+33C>T	N/A	Intron Variant
UTY transcript variant 20	NM_001258265.1:c.1029+33C… NM_001258265.1:c.1029+33C>T	N/A	Intron Variant
UTY transcript variant 21	NM_001258266.1:c.1413+33C… NM_001258266.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant 22	NM_001258267.1:c.1278+33C… NM_001258267.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 23	NM_001258268.1:c.1413+33C… NM_001258268.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant 24	NM_001258269.1:c.1503+33C… NM_001258269.1:c.1503+33C>T	N/A	Intron Variant
UTY transcript variant 25	NM_001258270.1:c.1278+33C… NM_001258270.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 78	NM_001400170.1:c.1413+33C… NM_001400170.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant 79	NM_001400171.1:c.1368+33C… NM_001400171.1:c.1368+33C>T	N/A	Intron Variant
UTY transcript variant 80	NM_001400173.1:c.1278+33C… NM_001400173.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 81	NM_001400175.1:c.1503+33C… NM_001400175.1:c.1503+33C>T	N/A	Intron Variant
UTY transcript variant 82	NM_001400177.1:c.1503+33C… NM_001400177.1:c.1503+33C>T	N/A	Intron Variant
UTY transcript variant 83	NM_001400178.1:c.1413+33C… NM_001400178.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant 84	NM_001400181.1:c.1278+33C… NM_001400181.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 85	NM_001400183.1:c.1569+33C… NM_001400183.1:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant 86	NM_001400185.1:c.1503+33C… NM_001400185.1:c.1503+33C>T	N/A	Intron Variant
UTY transcript variant 87	NM_001400187.1:c.1413+33C… NM_001400187.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant 88	NM_001400189.1:c.1368+33C… NM_001400189.1:c.1368+33C>T	N/A	Intron Variant
UTY transcript variant 89	NM_001400192.1:c.1413+33C… NM_001400192.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant 90	NM_001400195.1:c.1368+33C… NM_001400195.1:c.1368+33C>T	N/A	Intron Variant
UTY transcript variant 91	NM_001400199.1:c.1278+33C… NM_001400199.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 3	NM_007125.4:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 2	NM_182659.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 1	NM_182660.1:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant 26	NR_047596.1:n.	N/A	Intron Variant
UTY transcript variant 27	NR_047597.1:n.	N/A	Intron Variant
UTY transcript variant 28	NR_047598.1:n.	N/A	Intron Variant
UTY transcript variant 29	NR_047599.1:n.	N/A	Intron Variant
UTY transcript variant 30	NR_047600.1:n.	N/A	Intron Variant
UTY transcript variant 31	NR_047601.1:n.	N/A	Intron Variant
UTY transcript variant 32	NR_047602.1:n.	N/A	Intron Variant
UTY transcript variant 33	NR_047603.1:n.	N/A	Intron Variant
UTY transcript variant 34	NR_047604.1:n.	N/A	Intron Variant
UTY transcript variant 35	NR_047605.1:n.	N/A	Intron Variant
UTY transcript variant 36	NR_047606.1:n.	N/A	Intron Variant
UTY transcript variant 37	NR_047607.1:n.	N/A	Intron Variant
UTY transcript variant 38	NR_047608.1:n.	N/A	Intron Variant
UTY transcript variant 39	NR_047609.1:n.	N/A	Intron Variant
UTY transcript variant 40	NR_047610.1:n.	N/A	Intron Variant
UTY transcript variant 41	NR_047611.1:n.	N/A	Intron Variant
UTY transcript variant 42	NR_047612.1:n.	N/A	Intron Variant
UTY transcript variant 43	NR_047613.1:n.	N/A	Intron Variant
UTY transcript variant 44	NR_047614.1:n.	N/A	Intron Variant
UTY transcript variant 45	NR_047615.1:n.	N/A	Intron Variant
UTY transcript variant 46	NR_047616.1:n.	N/A	Intron Variant
UTY transcript variant 47	NR_047617.1:n.	N/A	Intron Variant
UTY transcript variant 48	NR_047618.1:n.	N/A	Intron Variant
UTY transcript variant 49	NR_047619.1:n.	N/A	Intron Variant
UTY transcript variant 50	NR_047620.1:n.	N/A	Intron Variant
UTY transcript variant 51	NR_047621.1:n.	N/A	Intron Variant
UTY transcript variant 52	NR_047622.1:n.	N/A	Intron Variant
UTY transcript variant 53	NR_047623.1:n.	N/A	Intron Variant
UTY transcript variant 54	NR_047624.1:n.	N/A	Intron Variant
UTY transcript variant 55	NR_047625.1:n.	N/A	Intron Variant
UTY transcript variant 56	NR_047626.1:n.	N/A	Intron Variant
UTY transcript variant 57	NR_047627.1:n.	N/A	Intron Variant
UTY transcript variant 58	NR_047628.1:n.	N/A	Intron Variant
UTY transcript variant 59	NR_047629.1:n.	N/A	Intron Variant
UTY transcript variant 60	NR_047630.1:n.	N/A	Intron Variant
UTY transcript variant 61	NR_047631.1:n.	N/A	Intron Variant
UTY transcript variant 62	NR_047632.1:n.	N/A	Intron Variant
UTY transcript variant 63	NR_047633.1:n.	N/A	Intron Variant
UTY transcript variant 64	NR_047634.1:n.	N/A	Intron Variant
UTY transcript variant 65	NR_047635.1:n.	N/A	Intron Variant
UTY transcript variant 66	NR_047636.1:n.	N/A	Intron Variant
UTY transcript variant 67	NR_047637.1:n.	N/A	Intron Variant
UTY transcript variant 68	NR_047638.1:n.	N/A	Intron Variant
UTY transcript variant 69	NR_047639.1:n.	N/A	Intron Variant
UTY transcript variant 70	NR_047640.1:n.	N/A	Intron Variant
UTY transcript variant 71	NR_047641.1:n.	N/A	Intron Variant
UTY transcript variant 72	NR_047642.1:n.	N/A	Intron Variant
UTY transcript variant 73	NR_047643.1:n.	N/A	Intron Variant
UTY transcript variant 74	NR_047644.1:n.	N/A	Intron Variant
UTY transcript variant 75	NR_047645.1:n.	N/A	Intron Variant
UTY transcript variant 76	NR_047646.1:n.	N/A	Intron Variant
UTY transcript variant 77	NR_047647.1:n.	N/A	Intron Variant
UTY transcript variant 92	NR_174404.1:n.	N/A	Intron Variant
UTY transcript variant 93	NR_174405.1:n.	N/A	Intron Variant
UTY transcript variant X1	XM_011531441.4:c.1569+33C… XM_011531441.4:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X2	XM_011531442.4:c.1569+33C… XM_011531442.4:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X3	XM_011531443.4:c.1503+33C… XM_011531443.4:c.1503+33C>T	N/A	Intron Variant
UTY transcript variant X5	XM_011531445.4:c.1434+33C… XM_011531445.4:c.1434+33C>T	N/A	Intron Variant
UTY transcript variant X6	XM_011531446.4:c.1413+33C… XM_011531446.4:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant X7	XM_011531447.4:c.1434+33C… XM_011531447.4:c.1434+33C>T	N/A	Intron Variant
UTY transcript variant X8	XM_011531448.4:c.1368+33C… XM_011531448.4:c.1368+33C>T	N/A	Intron Variant
UTY transcript variant X9	XM_011531451.4:c.1278+33C… XM_011531451.4:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant X10	XM_011531453.4:c.1569+33C… XM_011531453.4:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X11	XM_011531454.4:c.1569+33C… XM_011531454.4:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X12	XM_011531455.4:c.1569+33C… XM_011531455.4:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X21	XM_011531459.4:c.1569+33C… XM_011531459.4:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X26	XM_011531460.4:c.1569+33C… XM_011531460.4:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X24	XM_017030070.3:c.1569+33C… XM_017030070.3:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X29	XM_017030071.3:c.1569+33C… XM_017030071.3:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X30	XM_017030073.3:c.1278+33C… XM_017030073.3:c.1278+33C>T	N/A	Intron Variant
UTY transcript variant X4	XM_047442746.1:c.1503+33C… XM_047442746.1:c.1503+33C>T	N/A	Intron Variant
UTY transcript variant X13	XM_047442747.1:c.1569+33C… XM_047442747.1:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X14	XM_047442748.1:c.1569+33C… XM_047442748.1:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X15	XM_047442749.1:c.1503+33C… XM_047442749.1:c.1503+33C>T	N/A	Intron Variant
UTY transcript variant X16	XM_047442750.1:c.1434+33C… XM_047442750.1:c.1434+33C>T	N/A	Intron Variant
UTY transcript variant X17	XM_047442751.1:c.1413+33C… XM_047442751.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant X18	XM_047442752.1:c.1434+33C… XM_047442752.1:c.1434+33C>T	N/A	Intron Variant
UTY transcript variant X19	XM_047442753.1:c.1413+33C… XM_047442753.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant X20	XM_047442754.1:c.1413+33C… XM_047442754.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant X22	XM_047442755.1:c.1569+33C… XM_047442755.1:c.1569+33C>T	N/A	Intron Variant
UTY transcript variant X27	XM_047442756.1:c.1413+33C… XM_047442756.1:c.1413+33C>T	N/A	Intron Variant
UTY transcript variant X28	XM_047442757.1:c.1503+33C… XM_047442757.1:c.1503+33C>T	N/A	Intron Variant
UTY transcript variant X23	XR_007068451.1:n.	N/A	Intron Variant
UTY transcript variant X25	XR_007068452.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	G=	A
GRCh38.p14 chr Y	NC_000024.10:g.13357844=	NC_000024.10:g.13357844G>A
GRCh37.p13 chr Y	NC_000024.9:g.15469724=	NC_000024.9:g.15469724G>A
UTY transcript variant 4	NM_001258249.1:c.1569+33=	NM_001258249.1:c.1569+33C>T
UTY transcript variant 4	NM_001258249.2:c.1569+33=	NM_001258249.2:c.1569+33C>T
UTY transcript variant 5	NM_001258250.1:c.1230+33=	NM_001258250.1:c.1230+33C>T
UTY transcript variant 6	NM_001258251.1:c.1278+33=	NM_001258251.1:c.1278+33C>T
UTY transcript variant 7	NM_001258252.1:c.1413+33=	NM_001258252.1:c.1413+33C>T
UTY transcript variant 8	NM_001258253.1:c.1278+33=	NM_001258253.1:c.1278+33C>T
UTY transcript variant 9	NM_001258254.1:c.1413+33=	NM_001258254.1:c.1413+33C>T
UTY transcript variant 10	NM_001258255.1:c.1413+33=	NM_001258255.1:c.1413+33C>T
UTY transcript variant 11	NM_001258256.1:c.1413+33=	NM_001258256.1:c.1413+33C>T
UTY transcript variant 12	NM_001258257.1:c.1278+33=	NM_001258257.1:c.1278+33C>T
UTY transcript variant 13	NM_001258258.1:c.1434+33=	NM_001258258.1:c.1434+33C>T
UTY transcript variant 14	NM_001258259.1:c.1230+33=	NM_001258259.1:c.1230+33C>T
UTY transcript variant 15	NM_001258260.1:c.1368+33=	NM_001258260.1:c.1368+33C>T
UTY transcript variant 16	NM_001258261.1:c.1404+33=	NM_001258261.1:c.1404+33C>T
UTY transcript variant 17	NM_001258262.1:c.1569+33=	NM_001258262.1:c.1569+33C>T
UTY transcript variant 18	NM_001258263.1:c.1278+33=	NM_001258263.1:c.1278+33C>T
UTY transcript variant 19	NM_001258264.1:c.1365+33=	NM_001258264.1:c.1365+33C>T
UTY transcript variant 20	NM_001258265.1:c.1029+33=	NM_001258265.1:c.1029+33C>T
UTY transcript variant 21	NM_001258266.1:c.1413+33=	NM_001258266.1:c.1413+33C>T
UTY transcript variant 22	NM_001258267.1:c.1278+33=	NM_001258267.1:c.1278+33C>T
UTY transcript variant 23	NM_001258268.1:c.1413+33=	NM_001258268.1:c.1413+33C>T
UTY transcript variant 24	NM_001258269.1:c.1503+33=	NM_001258269.1:c.1503+33C>T
UTY transcript variant 25	NM_001258270.1:c.1278+33=	NM_001258270.1:c.1278+33C>T
UTY transcript variant 78	NM_001400170.1:c.1413+33=	NM_001400170.1:c.1413+33C>T
UTY transcript variant 79	NM_001400171.1:c.1368+33=	NM_001400171.1:c.1368+33C>T
UTY transcript variant 80	NM_001400173.1:c.1278+33=	NM_001400173.1:c.1278+33C>T
UTY transcript variant 81	NM_001400175.1:c.1503+33=	NM_001400175.1:c.1503+33C>T
UTY transcript variant 82	NM_001400177.1:c.1503+33=	NM_001400177.1:c.1503+33C>T
UTY transcript variant 83	NM_001400178.1:c.1413+33=	NM_001400178.1:c.1413+33C>T
UTY transcript variant 84	NM_001400181.1:c.1278+33=	NM_001400181.1:c.1278+33C>T
UTY transcript variant 85	NM_001400183.1:c.1569+33=	NM_001400183.1:c.1569+33C>T
UTY transcript variant 86	NM_001400185.1:c.1503+33=	NM_001400185.1:c.1503+33C>T
UTY transcript variant 87	NM_001400187.1:c.1413+33=	NM_001400187.1:c.1413+33C>T
UTY transcript variant 88	NM_001400189.1:c.1368+33=	NM_001400189.1:c.1368+33C>T
UTY transcript variant 89	NM_001400192.1:c.1413+33=	NM_001400192.1:c.1413+33C>T
UTY transcript variant 90	NM_001400195.1:c.1368+33=	NM_001400195.1:c.1368+33C>T
UTY transcript variant 91	NM_001400199.1:c.1278+33=	NM_001400199.1:c.1278+33C>T
UTY transcript variant 3	NM_007125.4:c.1278+33=	NM_007125.4:c.1278+33C>T
UTY transcript variant 2	NM_182659.1:c.1278+33=	NM_182659.1:c.1278+33C>T
UTY transcript variant 1	NM_182660.1:c.1278+33=	NM_182660.1:c.1278+33C>T
UTY transcript variant X1	XM_005262518.1:c.1413+33=	XM_005262518.1:c.1413+33C>T
UTY transcript variant X2	XM_005262519.1:c.777+33=	XM_005262519.1:c.777+33C>T
UTY transcript variant X3	XM_005262520.1:c.1569+33=	XM_005262520.1:c.1569+33C>T
UTY transcript variant X4	XM_005262521.1:c.1503+33=	XM_005262521.1:c.1503+33C>T
UTY transcript variant X5	XM_005262522.1:c.1479+33=	XM_005262522.1:c.1479+33C>T
UTY transcript variant X6	XM_005262523.1:c.1413+33=	XM_005262523.1:c.1413+33C>T
UTY transcript variant X7	XM_005262524.1:c.642+33=	XM_005262524.1:c.642+33C>T
UTY transcript variant X8	XM_005262525.1:c.1368+33=	XM_005262525.1:c.1368+33C>T
UTY transcript variant X9	XM_005262526.1:c.1413+33=	XM_005262526.1:c.1413+33C>T
UTY transcript variant X10	XM_005262527.1:c.1368+33=	XM_005262527.1:c.1368+33C>T
UTY transcript variant X11	XM_005262528.1:c.534+33=	XM_005262528.1:c.534+33C>T
UTY transcript variant X12	XM_005262529.1:c.1278+33=	XM_005262529.1:c.1278+33C>T
UTY transcript variant X13	XM_005262530.1:c.534+33=	XM_005262530.1:c.534+33C>T
UTY transcript variant X14	XM_005262531.1:c.1278+33=	XM_005262531.1:c.1278+33C>T
UTY transcript variant X15	XM_005262532.1:c.1434+33=	XM_005262532.1:c.1434+33C>T
UTY transcript variant X16	XM_005262533.1:c.1230+33=	XM_005262533.1:c.1230+33C>T
UTY transcript variant X17	XM_005262534.1:c.1179+33=	XM_005262534.1:c.1179+33C>T
UTY transcript variant X18	XM_005262535.1:c.1569+33=	XM_005262535.1:c.1569+33C>T
UTY transcript variant X19	XM_005262536.1:c.1188+33=	XM_005262536.1:c.1188+33C>T
UTY transcript variant X20	XM_005262537.1:c.1179+33=	XM_005262537.1:c.1179+33C>T
UTY transcript variant X21	XM_005262538.1:c.534+33=	XM_005262538.1:c.534+33C>T
UTY transcript variant X22	XM_005262539.1:c.534+33=	XM_005262539.1:c.534+33C>T
UTY transcript variant X23	XM_005262540.1:c.1278+33=	XM_005262540.1:c.1278+33C>T
UTY transcript variant X24	XM_005262541.1:c.285+33=	XM_005262541.1:c.285+33C>T
UTY transcript variant X25	XM_005262542.1:c.285+33=	XM_005262542.1:c.285+33C>T
UTY transcript variant X26	XM_005262543.1:c.1179+33=	XM_005262543.1:c.1179+33C>T
UTY transcript variant X27	XM_005262544.1:c.1278+33=	XM_005262544.1:c.1278+33C>T
UTY transcript variant X28	XM_005262545.1:c.1269+33=	XM_005262545.1:c.1269+33C>T
UTY transcript variant X29	XM_005262546.1:c.1230+33=	XM_005262546.1:c.1230+33C>T
UTY transcript variant X30	XM_005262547.1:c.216+33=	XM_005262547.1:c.216+33C>T
UTY transcript variant X31	XM_005262548.1:c.1179+33=	XM_005262548.1:c.1179+33C>T
UTY transcript variant X32	XM_005262549.1:c.1087-1826=	XM_005262549.1:c.1087-1826C>T
UTY transcript variant X33	XM_005262550.1:c.1278+33=	XM_005262550.1:c.1278+33C>T
UTY transcript variant X34	XM_005262551.1:c.1230+33=	XM_005262551.1:c.1230+33C>T
UTY transcript variant X35	XM_005262552.1:c.1188+33=	XM_005262552.1:c.1188+33C>T
UTY transcript variant X36	XM_005262553.1:c.1179+33=	XM_005262553.1:c.1179+33C>T
UTY transcript variant X37	XM_005262554.1:c.1278+33=	XM_005262554.1:c.1278+33C>T
UTY transcript variant X38	XM_005262555.1:c.-88+33=	XM_005262555.1:c.-88+33C>T
UTY transcript variant X39	XM_005262556.1:c.217-21509=	XM_005262556.1:c.217-21509C>T
UTY transcript variant X40	XM_005262557.1:c.866+8423=	XM_005262557.1:c.866+8423C>T
UTY transcript variant X41	XM_005262558.1:c.-239+33=	XM_005262558.1:c.-239+33C>T
UTY transcript variant X42	XM_005262559.1:c.216+33=	XM_005262559.1:c.216+33C>T
UTY transcript variant X1	XM_011531441.4:c.1569+33=	XM_011531441.4:c.1569+33C>T
UTY transcript variant X2	XM_011531442.4:c.1569+33=	XM_011531442.4:c.1569+33C>T
UTY transcript variant X3	XM_011531443.4:c.1503+33=	XM_011531443.4:c.1503+33C>T
UTY transcript variant X5	XM_011531445.4:c.1434+33=	XM_011531445.4:c.1434+33C>T
UTY transcript variant X6	XM_011531446.4:c.1413+33=	XM_011531446.4:c.1413+33C>T
UTY transcript variant X7	XM_011531447.4:c.1434+33=	XM_011531447.4:c.1434+33C>T
UTY transcript variant X8	XM_011531448.4:c.1368+33=	XM_011531448.4:c.1368+33C>T
UTY transcript variant X9	XM_011531451.4:c.1278+33=	XM_011531451.4:c.1278+33C>T
UTY transcript variant X10	XM_011531453.4:c.1569+33=	XM_011531453.4:c.1569+33C>T
UTY transcript variant X11	XM_011531454.4:c.1569+33=	XM_011531454.4:c.1569+33C>T
UTY transcript variant X12	XM_011531455.4:c.1569+33=	XM_011531455.4:c.1569+33C>T
UTY transcript variant X21	XM_011531459.4:c.1569+33=	XM_011531459.4:c.1569+33C>T
UTY transcript variant X26	XM_011531460.4:c.1569+33=	XM_011531460.4:c.1569+33C>T
UTY transcript variant X24	XM_017030070.3:c.1569+33=	XM_017030070.3:c.1569+33C>T
UTY transcript variant X29	XM_017030071.3:c.1569+33=	XM_017030071.3:c.1569+33C>T
UTY transcript variant X30	XM_017030073.3:c.1278+33=	XM_017030073.3:c.1278+33C>T
UTY transcript variant X4	XM_047442746.1:c.1503+33=	XM_047442746.1:c.1503+33C>T
UTY transcript variant X13	XM_047442747.1:c.1569+33=	XM_047442747.1:c.1569+33C>T
UTY transcript variant X14	XM_047442748.1:c.1569+33=	XM_047442748.1:c.1569+33C>T
UTY transcript variant X15	XM_047442749.1:c.1503+33=	XM_047442749.1:c.1503+33C>T
UTY transcript variant X16	XM_047442750.1:c.1434+33=	XM_047442750.1:c.1434+33C>T
UTY transcript variant X17	XM_047442751.1:c.1413+33=	XM_047442751.1:c.1413+33C>T
UTY transcript variant X18	XM_047442752.1:c.1434+33=	XM_047442752.1:c.1434+33C>T
UTY transcript variant X19	XM_047442753.1:c.1413+33=	XM_047442753.1:c.1413+33C>T
UTY transcript variant X20	XM_047442754.1:c.1413+33=	XM_047442754.1:c.1413+33C>T
UTY transcript variant X22	XM_047442755.1:c.1569+33=	XM_047442755.1:c.1569+33C>T
UTY transcript variant X27	XM_047442756.1:c.1413+33=	XM_047442756.1:c.1413+33C>T
UTY transcript variant X28	XM_047442757.1:c.1503+33=	XM_047442757.1:c.1503+33C>T

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

69 SubSNP, 13 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	OEFNER	ss12724427	Dec 05, 2003 (119)
2	PAGE	ss50392562	Mar 14, 2006 (126)
3	ILLUMINA	ss75015712	Dec 06, 2007 (129)
4	ILLUMINA	ss160978551	Dec 01, 2009 (131)
5	ILLUMINA	ss174816521	Jul 04, 2010 (132)
6	ILLUMINA	ss481872551	May 04, 2012 (137)
7	ILLUMINA	ss482864280	Sep 08, 2015 (146)
8	ILLUMINA	ss485730474	May 04, 2012 (137)
9	EXOME_CHIP	ss491581179	May 04, 2012 (137)
10	ILLUMINA	ss537588603	Jul 19, 2016 (147)
11	NHLBI-ESP	ss713673199	Apr 25, 2013 (138)
12	ILLUMINA	ss780630737	Sep 08, 2015 (146)
13	ILLUMINA	ss780687376	Sep 08, 2015 (146)
14	ILLUMINA	ss783310935	Sep 08, 2015 (146)
15	ILLUMINA	ss783360929	Sep 08, 2015 (146)
16	CDBUSTAMANTE	ss825683519	Aug 21, 2014 (142)
17	ILLUMINA	ss836124589	Sep 08, 2015 (146)
18	HAMMER_LAB	ss1397804346	Sep 08, 2015 (146)
19	JOBLING_UOL	ss1399956983	Apr 01, 2015 (144)
20	1000GENOMES	ss1556751975	Apr 01, 2015 (144)
21	EVA_EXAC	ss1694670056	Apr 01, 2015 (144)
22	ILLUMINA	ss1752814429	Sep 08, 2015 (146)
23	ILLUMINA	ss1917716170	Feb 12, 2016 (147)
24	ILLUMINA	ss1945968906	Feb 12, 2016 (147)
25	ILLUMINA	ss1958176743	Feb 12, 2016 (147)
26	ILLUMINA	ss2094838520	Dec 20, 2016 (150)
27	ILLUMINA	ss2095229588	Dec 20, 2016 (150)
28	USC_VALOUEV	ss2159353235	Dec 20, 2016 (150)
29	HUMAN_LONGEVITY	ss2321412418	Dec 20, 2016 (150)
30	ILLUMINA	ss2634994054	Nov 08, 2017 (151)
31	ILLUMINA	ss2635204611	Nov 08, 2017 (151)
32	GRF	ss2710438708	Nov 08, 2017 (151)
33	ILLUMINA	ss2711191585	Nov 08, 2017 (151)
34	GNOMAD	ss2745636744	Nov 08, 2017 (151)
35	AFFY	ss2985494878	Nov 08, 2017 (151)
36	SWEGEN	ss3020948612	Nov 08, 2017 (151)
37	ILLUMINA	ss3023053349	Nov 08, 2017 (151)
38	HUMGEN	ss3029947908	Nov 08, 2017 (151)
39	ILLUMINA	ss3630504413	Oct 12, 2018 (152)
40	ILLUMINA	ss3630504414	Oct 12, 2018 (152)
41	ILLUMINA	ss3632876949	Oct 12, 2018 (152)
42	ILLUMINA	ss3635264787	Oct 12, 2018 (152)
43	ILLUMINA	ss3637014911	Oct 12, 2018 (152)
44	ILLUMINA	ss3638886743	Oct 12, 2018 (152)
45	ILLUMINA	ss3640972275	Oct 12, 2018 (152)
46	ILLUMINA	ss3642746481	Oct 12, 2018 (152)
47	ILLUMINA	ss3643809509	Oct 12, 2018 (152)
48	ILLUMINA	ss3645021425	Oct 12, 2018 (152)
49	ILLUMINA	ss3653611860	Oct 12, 2018 (152)
50	ILLUMINA	ss3653611861	Oct 12, 2018 (152)
51	ILLUMINA	ss3654261605	Oct 12, 2018 (152)
52	ILLUMINA	ss3726713415	Jul 14, 2019 (153)
53	ILLUMINA	ss3744602693	Jul 14, 2019 (153)
54	ILLUMINA	ss3745564801	Jul 14, 2019 (153)
55	ILLUMINA	ss3773056408	Jul 14, 2019 (153)
56	KHV_HUMAN_GENOMES	ss3823535478	Jul 14, 2019 (153)
57	EVA	ss3825517248	Apr 27, 2020 (154)
58	SGDP_PRJ	ss3892708033	Apr 27, 2020 (154)
59	KRGDB	ss3943505818	Apr 27, 2020 (154)
60	EVA	ss3984772135	Apr 26, 2021 (155)
61	EVA	ss3985989343	Apr 26, 2021 (155)
62	GNOMAD	ss4126137761	Apr 26, 2021 (155)
63	EVA	ss5237629930	Apr 26, 2021 (155)
64	EVA	ss5316103800	Oct 17, 2022 (156)
65	1000G_HIGH_COVERAGE	ss5623821702	Oct 17, 2022 (156)
66	SANFORD_IMAGENETICS	ss5666137297	Oct 17, 2022 (156)
67	YY_MCH	ss5819514985	Oct 17, 2022 (156)
68	EVA	ss5848242452	Oct 17, 2022 (156)
69	EVA	ss5979925335	Oct 17, 2022 (156)
70	1000Genomes	NC_000024.9 - 15469724	Oct 12, 2018 (152)
71	1000Genomes_30x	NC_000024.10 - 13357844	Oct 17, 2022 (156)
72	chrY_custom_capture	NC_000024.9 - 15469724	Apr 27, 2020 (154)
73	Genome-wide autozygosity in Daghestan	NC_000024.8 - 13979118	Apr 27, 2020 (154)
74	ExAC	NC_000024.9 - 15469724	Oct 12, 2018 (152)
75	gnomAD - Genomes	NC_000024.10 - 13357844	Apr 26, 2021 (155)
76	gnomAD - Exomes	NC_000024.9 - 15469724	Jul 14, 2019 (153)
77	GO Exome Sequencing Project	NC_000024.9 - 15469724	Oct 12, 2018 (152)
78	KOREAN population from KRGDB	NC_000024.9 - 15469724	Apr 27, 2020 (154)
79	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000024.9 - 15469724	Apr 26, 2021 (155)
80	SGDP_PRJ	NC_000024.9 - 15469724	Apr 27, 2020 (154)
81	Siberian	NC_000024.9 - 15469724	Apr 27, 2020 (154)
82	ALFA	NC_000024.10 - 13357844	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs34910746	May 23, 2006 (127)
rs386621968	Aug 21, 2014 (142)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
555518, ss481872551, ss1397804346, ss2635204611, ss3643809509	NC_000024.8:13979117:G:A	NC_000024.10:13357843:G:A	(self)
84704963, 4258, 10182498, 14965365, 1973976, 50683212, 1215270, 44725013, 11869589, ss482864280, ss485730474, ss491581179, ss537588603, ss713673199, ss780630737, ss780687376, ss783310935, ss783360929, ss825683519, ss836124589, ss1399956983, ss1556751975, ss1694670056, ss1752814429, ss1917716170, ss1945968906, ss1958176743, ss2094838520, ss2095229588, ss2159353235, ss2634994054, ss2710438708, ss2711191585, ss2745636744, ss2985494878, ss3020948612, ss3023053349, ss3029947908, ss3630504413, ss3630504414, ss3632876949, ss3635264787, ss3637014911, ss3638886743, ss3640972275, ss3642746481, ss3645021425, ss3653611860, ss3653611861, ss3654261605, ss3744602693, ss3745564801, ss3773056408, ss3825517248, ss3892708033, ss3943505818, ss3984772135, ss3985989343, ss5237629930, ss5316103800, ss5666137297, ss5848242452, ss5979925335	NC_000024.9:15469723:G:A	NC_000024.10:13357843:G:A	(self)
111347637, 594971635, 6790061664, ss2321412418, ss3726713415, ss3823535478, ss4126137761, ss5623821702, ss5819514985	NC_000024.10:13357843:G:A	NC_000024.10:13357843:G:A	(self)
ss12724427, ss50392562, ss75015712, ss160978551, ss174816521	NT_011875.12:1671145:G:A	NC_000024.10:13357843:G:A	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

2 citations for rs9341278

PMID	Title	Author	Year	Journal
22271044	Y chromosome haplogroups and prostate cancer in populations of European and Ashkenazi Jewish ancestry.	Wang Z et al.	2012	Human genetics
35176104	Unveiling forensically relevant biogeographic, phenotype and Y-chromosome SNP variation in Pakistani ethnic groups using a customized hybridisation enrichment forensic intelligence panel.	Rauf S et al.	2022	PloS one

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs9341278