Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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Pathway
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Gene: RGD1563400 ENSRNOG00000048881

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Description

similar to paired immunoglobin-like type 2 receptor beta [Source:RGD Symbol;Acc:1563400]

Gene Synonyms

LOC102546487, LOC102553358, LOC360777, LOC363894, LOC498169, LOC680910, RGD1561143

Location

Primary_assembly 12: 18,210,535-18,216,443 reverse strand.

mRatBN7.2:CM026985.1

About this gene

This gene has 2 transcripts (splice variants), 108 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000098725.1	RGD1563400-201	1246	251aa	ENSRNOP00000090856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ABT8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000119260.1	RGD1563400-202	1159	222aa	ENSRNOP00000090991.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6APL2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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