Summary
- Splice variants
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- Gene alleles
Sequence
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Comparative Genomics
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Gene: Lima1 ENSRNOG00000059801

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Description

LIM domain and actin binding 1 [Source:RGD Symbol;Acc:1564050]

Location

Primary_assembly 7: 130,901,717-131,001,473 reverse strand.

mRatBN7.2:CM026980.1

About this gene

This gene has 2 transcripts (splice variants), 247 orthologues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000109357.1	Lima1-202	4651	773aa	ENSRNOP00000096626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AM55	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000091702.2	Lima1-201	4214	755aa	ENSRNOP00000072604.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LR10	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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