pumilio
pum
Primary_assembly 3R: 9,066,343-9,237,682 reverse strand.
BDGP6.46:AE014297.3
This gene has 8 transcripts (splice variants) and 402 orthologues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| FBtr0333667 | pum-RG | 10223 | 1533aa | FBpp0305823 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A075BI55 A0A075BJ98 A0A075BJA1 A0A075BJE1 A0A075BJG6 A0A075BJW8 A0A075BLT6 A0A0B4KFF0 P25822 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0333668 | pum-RH | 8057 | 921aa | FBpp0305824 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KFX7 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0081993 | pum-RB | 7473 | 1185aa | FBpp0081473 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A075BI71 A0A075BIA6 A0A075BJE8 A0A075BJF4 A0A075BJN8 A0A075BJP0 A0A075BJY4 A0A075BLU8 A0A075BLV2 A0A075BLV4 | APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
| FBtr0081992 | pum-RC | 6809 | 1533aa | FBpp0081472 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KFF0 P25822 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0081990 | pum-RA | 6661 | 1533aa | FBpp0081470 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KFF0 P25822 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0081991 | pum-RD | 6659 | 1533aa | FBpp0081471 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KFF0 P25822 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0081994 | pum-RE | 4685 | 935aa | FBpp0081474 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0305197 | pum-RF | 4655 | 925aa | FBpp0293727 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K612 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
