Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Smg5 FBgn0019890

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Description

Smg5 nonsense mediated mRNA decay factor

Gene Synonyms

Smg5

Location

Primary_assembly 2L: 13,898,828-13,904,661 reverse strand.

BDGP6.46:AE014134.6

About this gene

This gene has 3 transcripts (splice variants) and 235 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0080562	Smg5-RB	4809	1177aa	FBpp0080139	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V414	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
FBtr0343669	Smg5-RC	4102	1177aa	FBpp0310261	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9V414	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
FBtr0080561	Smg5-RA	4021	1177aa	FBpp0080138	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8T080 Q95TL1 Q9V414	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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