Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Orthologues
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Gene: RN-tre FBgn0020620

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Description

Related to the N terminus of tre oncogene

Gene Synonyms

RN-tre

Location

Primary_assembly 2R: 13,984,815-13,990,707 reverse strand.

BDGP6.46:AE013599.5

About this gene

This gene has 5 transcripts (splice variants), 2 orthologues and 17 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0087605	RN-tre-RA	2623	571aa	FBpp0086731	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A1Z9K4 Q5BI38	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
FBtr0087604	RN-tre-RB	2980	457aa	FBpp0086730	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KQC4	-
FBtr0087603	RN-tre-RC	2715	485aa	FBpp0086729	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95RE0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
FBtr0330627	RN-tre-RF	2715	546aa	FBpp0303477	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4KEQ5	-
FBtr0330626	RN-tre-RE	2529	468aa	FBpp0303476	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0B4JD18	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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