Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Gene: Cpsf6 FBgn0035872

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Description

Cleavage and polyadenylation specific factor 6

Gene Synonyms

Cpsf6

Location

Primary_assembly 3L: 8,310,493-8,315,502 reverse strand.

BDGP6.46:AE014296.5

About this gene

This gene has 2 transcripts (splice variants) and 393 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0076710	Cpsf6-RA	2862	652aa	FBpp0076433	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9VSH4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
FBtr0304628	Cpsf6-RB	2721	605aa	FBpp0293170	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9NF33	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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