Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: SMC5 FBgn0052438

.

Description

Structural maintenance of chromosomes 5

Gene Synonyms

SMC5

Location

Primary_assembly 3L: 21,569,176-21,573,523 forward strand.

BDGP6.46:AE014296.5

About this gene

This gene has 4 transcripts (splice variants), 117 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0301600	SMC5-RE	3292	1034aa	FBpp0290815	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7YU66 Q8IPT2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
FBtr0301601	SMC5-RF	3269	1001aa	FBpp0290816	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7KTV9 Q8T386	-
FBtr0333455	SMC5-RG	3265	1025aa	FBpp0305646	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9PGC9	-
FBtr0333456	SMC5-RH	3166	992aa	FBpp0305647	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q95S77 Q9VP12	-

.

Summary

.

.