tropomodulin
tmod
Primary_assembly 3R: 30,532,607-30,578,905 forward strand.
BDGP6.46:AE014297.3
This gene has 18 transcripts (splice variants) and 1142 orthologues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| FBtr0306686 | tmod-RN | 2699 | 567aa | FBpp0297625 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K6N4 Q6IIZ8 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| FBtr0336446 | tmod-RP | 4701 | 438aa | FBpp0307552 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KHF2 | - |
| FBtr0306687 | tmod-RO | 3484 | 424aa | FBpp0297626 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C7LAH8 | - |
| FBtr0302600 | tmod-RK | 3232 | 424aa | FBpp0291756 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C7LAH8 | - |
| FBtr0113483 | tmod-RG | 3192 | 526aa | FBpp0112393 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A8JRH3 Q6IDG5 | - |
| FBtr0336447 | tmod-RQ | 3182 | 454aa | FBpp0307553 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4KHW6 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| FBtr0302111 | tmod-RI | 3000 | 439aa | FBpp0291321 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C8VV00 Q9VA59 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| FBtr0085659 | tmod-RD | 2906 | 439aa | FBpp0085021 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA59 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| FBtr0085660 | tmod-RF | 2770 | 439aa | FBpp0085022 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA59 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| FBtr0302112 | tmod-RJ | 2753 | 409aa | FBpp0291322 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA58 | - |
| FBtr0302110 | tmod-RH | 2717 | 372aa | FBpp0291320 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | E1JJ21 | - |
| FBtr0085661 | tmod-RC | 2716 | 409aa | FBpp0085023 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA58 | - |
| FBtr0085658 | tmod-RE | 2685 | 439aa | FBpp0085020 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA59 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| FBtr0302601 | tmod-RL | 2662 | 439aa | FBpp0291757 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA59 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| FBtr0479778 | tmod-RR | 2614 | 526aa | FBpp0428111 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A6H2EEH6 | - |
| FBtr0085662 | tmod-RA | 2537 | 367aa | FBpp0085024 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C6TP61 O46231 | - |
| FBtr0085663 | tmod-RB | 2508 | 403aa | FBpp0085025 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q9VA56 | - |
| FBtr0306685 | tmod-RM | 2299 | 449aa | FBpp0297624 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0B4K7R6 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
