TATA box binding protein-related factor 2
Trf2
Primary_assembly X: 8,409,272-8,433,011 forward strand.
BDGP6.46:AE014298.5
This gene has 6 transcripts (splice variants), 215 orthologues and 2 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| FBtr0300577 | Trf2-RF | 9866 | 1715aa | FBpp0289804 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q07DP5 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| FBtr0330106 | Trf2-RH | 10041 | 632aa | FBpp0303139 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A9YJX8 B4YWI1 F6J4J3 F6JBM5 F6JBM9 F6JBN0 Q8T052 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0112927 | Trf2-RE | 7131 | 1715aa | FBpp0111840 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q07DP5 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| FBtr0333750 | Trf2-RI | 7034 | 1714aa | FBpp0305892 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M9PHD8 Q9XZD9 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0333811 | Trf2-RJ | 6934 | 632aa | FBpp0305945 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q8T052 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| FBtr0330105 | Trf2-RG | 6840 | 1715aa | FBpp0303138 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0F6VY44 A0A0F6YEH2 Q07DP5 Q7KA83 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
