|
| Status |
Public on Aug 09, 2022 |
| Title |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
Non-coding RNA profiling by high throughput sequencing
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
36030240 |
| Submission date |
Apr 28, 2022 |
| Last update date |
May 10, 2023 |
| Contact name |
Márton Miskei |
| E-mail(s) |
miskeim@gmail.com
|
| Organization name |
University of Debrecen
|
| Department |
Department of Biochemistry and Molecular Biology
|
| Street address |
Nagyerdei Krt. 48.
|
| City |
Debrecen |
| ZIP/Postal code |
4032 |
| Country |
Hungary |
| |
|
| Platforms (4)
|
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
| GPL17970 |
Illumina MiSeq (Arabidopsis thaliana) |
| GPL19580 |
Illumina NextSeq 500 (Arabidopsis thaliana) |
| GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
|
| Samples (30)
|
| GSM6077001 |
ChIP_ndx-gfp_ip_rep1 |
| GSM6077002 |
ChIP_ndx-gfp_ip_rep2 |
| GSM6077003 |
DRIP_col0_input |
| GSM6077004 |
DRIP_col0_ip_rep1 |
| GSM6077005 |
DRIP_col0_ip_rep2 |
| GSM6077006 |
DRIP_col0_rnaseh |
| GSM6077007 |
DRIP_ndx1-4_input |
| GSM6077008 |
DRIP_ndx1-4_ip_rep1 |
| GSM6077009 |
DRIP_ndx1-4_ip_rep2 |
| GSM6077010 |
DRIP_ndx1-4_rnaseh |
| GSM6077011 |
Hi-C_col0 |
| GSM6077012 |
Hi-C_ndx1-4_rep1 |
| GSM6077013 |
Hi-C_ndx1-4_rep2 |
| GSM6077014 |
sRNA_col0_rep1 |
| GSM6077015 |
sRNA_col0_rep2 |
| GSM6077016 |
sRNA_col0_rep3 |
| GSM6077017 |
sRNA_ndx1-4_rep1 |
| GSM6077018 |
sRNA_ndx1-4_rep2 |
| GSM6077019 |
sRNA_ndx1-4_rep3 |
| GSM6320925 |
BS, col0, rep1 |
| GSM6320926 |
BS, col0, rep2 |
| GSM6320927 |
BS, ndx1-4, rep1 |
| GSM6320928 |
BS, ndx1-4, rep2 |
| GSM6320929 |
mRNA, col0, rep1 |
| GSM6320930 |
mRNA, col0, rep2 |
| GSM6320931 |
mRNA, ndx1-4, rep1 |
| GSM6320932 |
mRNA, ndx1-4, rep2 |
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE201837 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [ChIP-seq] |
| GSE201838 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [DRIP-seq] |
| GSE201839 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [Hi-C] |
| GSE201840 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [sRNA-seq] |
| GSE207841 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [Bisulfite-seq] |
| GSE207842 |
Nodulin homeobox (NDX) is required for heterochromatin homeostasis in Arabidopsis [RNA-seq] |
|
| Relations |
| BioProject |
PRJNA833168 |
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