 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jun 28, 2022 |
| Title |
Single-nucleus profiling of adult mice subventricular zone after blast-TBI |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To elucidate molecular features of the cells of Sub-ventricular Zone (SVZ), their progeny at each differentiation stage, and surrounding cells in SVZ under blast wave-induced changes, cells were profiled from matched SVZ of 3 mice that had received blast injury and 3 controls（The controls sequencing profile can be assessed in GEO at GSM5938054）.Cell type specific gene expression responding to (blast-related traumatic brain injury, bTBI) were revealed, some of which were closely associated with pathogenesis post-injury. Furthermore, the diverse cell to cell interaction networks uncovered an array of cellular processes under bTBI. Our gene expression atlas provides extensive resources for future researches regarding bTBI induced pathogenesis, its therapeutic interventions or diagnostic tests.
|
| |
|
| Overall design |
SVZ mRNA profiles of 7-week old bTBI mice were generated by scRNA-Seq.
|
| |
|
| Contributor(s) |
Chen X, Liang W, Li M |
| Citation(s) |
36604452, 37783673 |
| Submission date |
Jun 28, 2022 |
| Last update date |
Oct 18, 2023 |
| Contact name |
Weibo Liang |
| E-mail(s) |
liangweibo@gmail.com
|
| Organization name |
Sichuan University
|
| Street address |
Renmin South Road
|
| City |
Chengdu |
| ZIP/Postal code |
610041 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (1) |
|
| Relations |
| BioProject |
PRJNA853573 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE207078_RAW.tar |
64.3 Mb |
(http)(custom) |
TAR (of MTX, TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
|
|
|
|
 |
