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Series GSE213206 Query DataSets for GSE213206
Status Public on Feb 07, 2024
Title m6A modification of monocytes and macrophages
Organism Homo sapiens
Experiment type Other
Summary RNA modifications are essential for the establishment of cellular identity. Although increasing evidence indicates that RNA modifications control the innate immune response, their role in monocyte-to-macrophage differentiation and polarisation is unclear.
We profile m6A epitranscriptomes of monocytes and macrophages at resting, pro- and anti-inflammatory states.
 
Overall design m6A-IP-Seq was performed as previously described by refined RIP-seq protocol for epitranscriptome analysis with low input materials.
 
Contributor(s) Pinello N, Song R, Lee Q, Wong JJ
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Submission date Sep 12, 2022
Last update date Feb 08, 2024
Contact name RENHUA SONG
E-mail(s) Renhua.song1989@gmail.com
Phone 61452667663
Organization name Centenary Institute
Lab Epigenetics and RNA Biology Program
Street address Charles Perkins Centre - D17, Level 4 West. The University of Sydney Johns Hopkins Drive
City Camperdown
State/province NSW
ZIP/Postal code 2050
Country Australia
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (16)
GSM6574449 Mo THP-1_m6A [Input_Mo_1]
GSM6574450 Mo THP-1_m6A [Input_Mo_2]
GSM6574451 Mo THP-1_m6A [IP_Mo_1]
This SubSeries is part of SuperSeries:
GSE213207 5hmC and m6a modification and Translatomes of monocytes and macrophages
Relations
BioProject PRJNA879756

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE213206_RAW.tar 1.0 Gb (http)(custom) TAR (of BW, NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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