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Series GSE117606 Query DataSets for GSE117606
Status Public on Dec 01, 2018
Title Gene expression data of patients presenting with concurrent colorectal adenomas and colorectal tumors, including adjacent tissue to the tumor
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Gene expression profiles of 70 patients presenting with concurrent colorectal adenomas and colorectal tumors were obtained using Affymetrix U133+ arrays.
 
Overall design Samples were obtained from Avaden Biosciences as FFPE blocks, from which sections were derived of the adenoma, tumor and tissue adjacent to the tumor. Patients were selected from surgery cases for where concurrent adenoma and tumor were present, excluding patients with hereditary cancer syndromes.
 
Contributor(s) Reumers J, Gaj S, Van Wesenbeeck L, Krishna V, Chu G, Van den Wyngaert I, Verstraeten K, Borzillo G, Smans K, Peeters PJ, Arts J, Bachman K
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Submission date Jul 24, 2018
Last update date Dec 02, 2018
Contact name Joke Reumers
E-mail(s) jreumers@its.jnj.com
Organization name Janssen R&D
Department DPDS
Lab Computational Sciences
Street address Turnhoutseweg 32
City Beerse
State/province -
ZIP/Postal code 2340
Country Belgium
 
Platforms (1)
GPL25373 [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate [CDF: HTHGU133PlusPM_Hs_ENTREZG_20]
Samples (208)
GSM3304749 789B: Tumor of Patient 789
GSM3304750 789A: Adenoma of Patient 789
GSM3304751 271C: Adjacent Mucosa of Patient 271
Relations
BioProject PRJNA482634

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117606_GEO_jreumers_CRC_concurrent.rds.gz 29.2 Mb (ftp)(http) RDS
GSE117606_RAW.tar 385.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
Processed data are available on Series record

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