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Series GSE121198 Query DataSets for GSE121198
Status Public on Jul 01, 2019
Title ARID1A and PI3-Kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion
Organisms Homo sapiens; Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s)
  • Wilson MR, Reske JJ, Holladay J, Wilber GE et al. ARID1A and PI3-kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion. Nat Commun 2019 Aug 7;10(1):3554. PMID: 31391455
  • Reske JJ, Wilson MR, Chandler RL. ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation. Epigenetics Chromatin 2020 Apr 22;13(1):22. PMID: 32321567
  • Wilson MR, Reske JJ, Koeman J, Adams M et al. SWI/SNF Antagonism of PRC2 Mediates Estrogen-Induced Progesterone Receptor Expression. Cells 2022 Mar 15;11(6). PMID: 35326450
Submission date Oct 12, 2018
Last update date Mar 31, 2022
Contact name Ronald L. Chandler
E-mail(s) rlc@msu.edu
Organization name Michigan State University
Department Obstetrics, Gynecology and Reproductive Biology
Street address 3100-4 400 Monroe NW
City Grand Rapids
State/province MI
ZIP/Postal code 49503
Country USA
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (51)
GSM3721960 NE1_RNA
GSM3721961 NE2_RNA
GSM3721962 NE3_RNA
This SuperSeries is composed of the following SubSeries:
GSE129779 ARID1A and PI3-Kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion [12Z_1A_PI3K_RNA-seq]
GSE129780 ARID1A and PI3-Kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion [12Z_ATAC-seq]
GSE129781 ARID1A and PI3-Kinase pathway mutations in the endometrium drive epithelial transdifferentiation and collective invasion [12Z_ChIP-seq]
Relations
BioProject PRJNA496062

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE121198_RAW.tar 24.4 Mb (http)(custom) TAR (of BROADPEAK, TAB)
SRA Run SelectorHelp

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