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Series GSE128380 Query DataSets for GSE128380
Status Public on May 01, 2019
Title Transcriptome data of temporal and cingulate cortex in the Rett syndrome brain
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Rett syndrome is an X-linked neurodevelopmental disorder caused by mutation in the methyl-CpG-binding protein 2 gene in the majority of cases. We describe an RNA sequencing dataset of postmortem brain tissue samples from four females clinically diagnosed with Rett syndrome and four age-matched female donors. The dataset contains transcriptomes from two brain regions, temporal and cingulate cortex, for each individual, providing a valuable resource to explore the biology of the human brain in Rett syndrome.
 
Overall design Transcriptional profiles for postmortem temporal and cingulate cortex from four females with Rett syndrome and four age-matched controls.
 
Contributor(s) Aldinger KA
Citation(s) 32561870
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 MH067842 Function and Structure Adaptations in Forebrain Development CHILDREN'S HOSPITAL LOS ANGELES PAT LEVITT
Submission date Mar 15, 2019
Last update date Jun 29, 2020
Contact name Kimberly A Aldinger
E-mail(s) kimberly.aldinger@seattlechildrens.org
Organization name Seattle Children's Research Institute
Street address 1900 Nineth Ave
City Seattle
State/province WA
ZIP/Postal code 98101
Country USA
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (16)
GSM3673208 1038_CTL_CCTX
GSM3673209 1614_CTL_CCTX
GSM3673210 4724_CTL_CCTX
Relations
BioProject PRJNA527289
SRA SRP188555

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE128380_rett_rnaseq_0119.norm_counts2.csv.gz 1.4 Mb (ftp)(http) CSV
GSE128380_rett_rnaseq_0119.star_fc.counts2.txt.gz 579.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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