|
| Status |
Public on Mar 31, 2020 |
| Title |
Single-cell transcriptomes of the aging human skin reveal loss of fibroblast priming |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Fibroblasts are the main dermal cell type and are essential for the architecture and function of human skin. Important differences have been described between fibroblasts localized in distinct dermal layers, and these cells are also known to perform varied functions. However, this phenomenon has not been analyzed comprehensively yet. Here we have used single-cell RNA sequencing to analyze >15,000 cells from a sun-protected area in young and old donors. Our results define four main fibroblast subpopulations that can be spatially localized and functionally distinguished. Importantly, intrinsic aging reduces this fibroblast ‘priming’, generates distinct expression patterns of skin aging-associated genes, and substantially reduces the interactions of dermal fibroblasts with other skin cell types. Our work thus provides comprehensive evidence for a functional specialization of human dermal fibroblasts and suggests that the age-related loss of fibroblast priming contributes to human skin aging.
|
| |
|
| Overall design |
Overall 5 samples were analyzed. Two of them are from young subjects (y1=25y, y2=27y) and serve as replicates, three of them are from old subjects (o1=53y, o2=70y, o3=69y) and serve as replicates.
Please note that the 'seurat_analysis_lyko.RData' file was replaced with the seurat_analysis_lyko.rds on Aug 6th, 2020.
|
| |
|
| Contributor(s) |
Lyko F, Rodriguez-Paredes M |
| Citation(s) |
32327715 |
| Submission date |
May 09, 2019 |
| Last update date |
Feb 05, 2024 |
| Contact name |
Guenter Raddatz |
| Organization name |
German Center for Cancer Research
|
| Street address |
Im Neuenheimer Feld 580
|
| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
| |
|
| Platforms (1) |
|
| Samples (5)
|
|
| Relations |
| BioProject |
PRJNA542149 |
| SRA |
SRP197355 |
Less...
More...