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Series GSE131013 Query DataSets for GSE131013
Status Public on May 10, 2020
Title Methylation data from healthy, adjacent normal and tumor colon cells
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Methylation profiles of paired normal adjacent mucosa and tumor samples from 96 individuals and 48 healthy colon mucosae, were obtained through Illumina Infinium Human Methylation 450K BeadChip. This dataset is in the context of the COLONOMICS project and to query additional information you can visit the project website www.colonomics.org.
 
Overall design Colon tumor and adjacent paired normal mucosa tissues samples used in this study were selected from a series of cases with a new diagnosis of colorectal adenocarcinoma histologically confirmed. Included cases were from a homogenous series of patients with more than three years of follow up, early stage (II), without neoadjuvant chemotherapy and microsatellite stable colon cancer. Additionally, samples of colon mucosa from 48 healthy donors without colonic lesions were obtained during colonoscopy.
 
Contributor(s) Díez-Villanueva A, Sanz-Pamplona R, Carreras-Torres R, Moratalla F, Alonso H, Aussó S, Paré-Brunet L, Berenguer T, Peinado MA, Berdasco M, Moreno V
Citation(s) 32957849, 34419169, 36182938
Submission date May 10, 2019
Last update date Sep 01, 2023
Contact name Victor Moreno
E-mail(s) v.moreno@iconcologia.net
Organization name Catalan Institute of Oncology
Department Oncology Data Analytics Program
Street address Granvia 199
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (240)
GSM3759532 Paired Adjacent Normal sample from A2004_N patient
GSM3759533 Tumor sample from A2004_T patient
GSM3759534 Paired Adjacent Normal sample from A2027_N patient
This SubSeries is part of SuperSeries:
GSE166427 Healthy, adjacent normal and tumor colon cells
Relations
BioProject PRJNA542323

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE131013_CLX_Methylation_Sentrix.txt.gz 4.4 Kb (ftp)(http) TXT
GSE131013_RAW.tar 2.1 Gb (http)(custom) TAR (of IDAT)
GSE131013_normalized_matrix.txt.gz 468.0 Mb (ftp)(http) TXT
Processed data are available on Series record

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